Mir-34

MirGeneDB ID

Rph-Mir-34

Family name

MIR-34 (all species)

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-34 Aca-Mir-34-P1 Aca-Mir-34-P2a Aca-Mir-34-P2b Aca-Mir-34-P3a Aca-Mir-34-P3c Aca-Mir-34-P3d Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P1 Ami-Mir-34-P2a Ami-Mir-34-P2b Ami-Mir-34-P3a Ami-Mir-34-P3b Ami-Mir-34-P3c Ami-Mir-34-P3d Asu-Mir-34 Bfl-Mir-34-P5a Bfl-Mir-34-P5b Bfl-Mir-34-P6a Bfl-Mir-34-P6b Bfl-Mir-34-P7 Bfl-Mir-34-P8 Bge-Mir-34 Bla-Mir-34-P5 Bla-Mir-34-P6 Bla-Mir-34-P7 Bla-Mir-34-P8 Bta-Mir-34-P1 Bta-Mir-34-P2a Bta-Mir-34-P2b Bta-Mir-34-P3a Bta-Mir-34-P3b Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cfa-Mir-34-P2a Cfa-Mir-34-P2b Cfa-Mir-34-P3b Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P1 Cja-Mir-34-P2a Cja-Mir-34-P2b Cja-Mir-34-P3a-v1 Cja-Mir-34-P3b Cja-Mir-34-P3c Cli-Mir-34-P1 Cli-Mir-34-P2a Cli-Mir-34-P2b Cli-Mir-34-P3a Cli-Mir-34-P3b Cli-Mir-34-P3c Cli-Mir-34-P3d Cmi-Mir-34-P1 Cmi-Mir-34-P2a Cmi-Mir-34-P2b Cmi-Mir-34-P3a Cmi-Mir-34-P3b Cmi-Mir-34-P3c Cmi-Mir-34-P3d Cpi-Mir-34-P1 Cpi-Mir-34-P2a Cpi-Mir-34-P2b Cpi-Mir-34-P3a Cpi-Mir-34-P3b Cpi-Mir-34-P3c Cpi-Mir-34-P3d Cpo-Mir-34-P1 Cpo-Mir-34-P2a Cpo-Mir-34-P2b Cpo-Mir-34-P3a Cpo-Mir-34-P3c Csc-Mir-34-P19a Csc-Mir-34-P19b Csc-Mir-34-P19c Csc-Mir-34-P20 Cte-Mir-34 Dan-Mir-34 Dgr-Mir-34-P21 Dgr-Mir-34-P22 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dno-Mir-34-P2a Dno-Mir-34-P2b Dno-Mir-34-P3a Dno-Mir-34-P3b Dno-Mir-34-P3c Dpu-Mir-34 Dre-Mir-34-P1 Dre-Mir-34-P2a Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Ebu-Mir-34-P2a Ebu-Mir-34-P2b Eca-Mir-34-P1 Eca-Mir-34-P2a Eca-Mir-34-P2b Eca-Mir-34-P3b Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Ete-Mir-34-P2a Ete-Mir-34-P2b Ete-Mir-34-P3b Ete-Mir-34-P3c Gga-Mir-34-P1 Gga-Mir-34-P2a Gga-Mir-34-P2b Gga-Mir-34-P3a Gga-Mir-34-P3b Gga-Mir-34-P3c Gga-Mir-34-P3d Gja-Mir-34-P1 Gja-Mir-34-P2a Gja-Mir-34-P2b Gja-Mir-34-P3a Gja-Mir-34-P3b Gja-Mir-34-P3c Gja-Mir-34-P3d Gmo-Mir-34-P1 Gmo-Mir-34-P3c Gmo-Mir-34-P3d Gpa-Mir-34 Gsp-Mir-34 Hme-Mir-34-P11 Hme-Mir-34-P12 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P1 Hsa-Mir-34-P2a Hsa-Mir-34-P2b Hsa-Mir-34-P3a-v1 Hsa-Mir-34-P3b Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P1 Laf-Mir-34-P2a Laf-Mir-34-P2b Laf-Mir-34-P3b Laf-Mir-34-P3c Lan-Mir-34-P9 Lan-Mir-34-P10 Lch-Mir-34-P1 Lch-Mir-34-P2a Lch-Mir-34-P2b Lch-Mir-34-P3a Lch-Mir-34-P3b Lch-Mir-34-P3d Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P1 Loc-Mir-34-P2a Loc-Mir-34-P2b Loc-Mir-34-P3a Loc-Mir-34-P3b Loc-Mir-34-P3c Loc-Mir-34-P3d Lpo-Mir-34-P13 Lpo-Mir-34-P14 Lpo-Mir-34-P15 Lpo-Mir-34-P16 Lpo-Mir-34-P17 Lpo-Mir-34-P18 Mal-Mir-34-P1 Mal-Mir-34-P3c Mal-Mir-34-P3d Mdo-Mir-34-P1 Mdo-Mir-34-P2a Mdo-Mir-34-P2b Mdo-Mir-34-P3b Mdo-Mir-34-P3c Mdo-Mir-34-P3d Mgi-Mir-34 Mml-Mir-34-P1 Mml-Mir-34-P2a Mml-Mir-34-P2b Mml-Mir-34-P3b Mml-Mir-34-P3c Mmr-Mir-34-P1 Mmr-Mir-34-P2a Mmr-Mir-34-P2b Mmr-Mir-34-P3b Mmr-Mir-34-P3c Mmu-Mir-34-P1 Mmu-Mir-34-P2a Mmu-Mir-34-P2b Mmu-Mir-34-P3a Mmu-Mir-34-P3b Mmu-Mir-34-P3c Mom-Mir-34 Mun-Mir-34-P1 Mun-Mir-34-P2a Mun-Mir-34-P2b Mun-Mir-34-P3a Mun-Mir-34-P3d Neu-Mir-34-P1 Neu-Mir-34-P2a-v1 Neu-Mir-34-P3b Neu-Mir-34-P3c Neu-Mir-34-P3d Npo-Mir-34 Oan-Mir-34-P1 Oan-Mir-34-P2a Oan-Mir-34-P2b Oan-Mir-34-P3a Oan-Mir-34-P3b Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P1 Ocu-Mir-34-P2a Ocu-Mir-34-P2b Ocu-Mir-34-P3a Ocu-Mir-34-P3b Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P1 Pab-Mir-34-P2a Pab-Mir-34-P2b Pab-Mir-34-P3a Pab-Mir-34-P3b Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P1 Pbv-Mir-34-P2a Pbv-Mir-34-P2b Pbv-Mir-34-P3a Pbv-Mir-34-P3b Pbv-Mir-34-P3c Pbv-Mir-34-P3d Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P1 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P1 Rno-Mir-34-P2a Rno-Mir-34-P2b Rno-Mir-34-P3a Rno-Mir-34-P3b Rno-Mir-34-P3c Sha-Mir-34-P1 Sha-Mir-34-P2a Sha-Mir-34-P2b Sha-Mir-34-P3b Sha-Mir-34-P3c Sha-Mir-34-P3d Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P1 Spt-Mir-34-P2a Spt-Mir-34-P2b Spt-Mir-34-P3b Spt-Mir-34-P3c Spt-Mir-34-P3d Spu-Mir-34 Sro-Mir-34-P23 Sro-Mir-34-P24 Sto-Mir-34-P1 Sto-Mir-34-P2a Sto-Mir-34-P2b Sto-Mir-34-P3a Sto-Mir-34-P3b Sto-Mir-34-P3c Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P1 Tgu-Mir-34-P2a Tgu-Mir-34-P2b Tgu-Mir-34-P3a Tgu-Mir-34-P3c Tgu-Mir-34-P3d Tni-Mir-34-P1 Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xbo-Mir-34-P25a Xbo-Mir-34-P25b Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2 Xtr-Mir-34-P1 Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2 Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2 Xtr-Mir-34-P3a Xtr-Mir-34-P3b Xtr-Mir-34-P3c Xtr-Mir-34-P3d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Ruditapes_GCA_009026015)

CM018531.1: 6737344-6737402 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-34)

Mir-34 CM018531.1: 6737344-6737402 [-] Ensembl
Mir-277 CM018531.1: 6739135-6739193 [-] Ensembl
Mir-317 CM018531.1: 6746836-6746893 [-] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAGGUGAUUGGUUUCUAUGGCGAUGUUUUAUGGCAGUGUGGUUAGCUGGUUGUCAAGGGAGCUGUACAACCACUUUCUGCACUCCAGAAAAACGUGUCAUUAUUUCGGCAAUUCUGCGA

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Structure

        10           20        30         40        50         
AAGGUGAUUGGUUUCUA---|   G       A-   C    UG UU  C       CAAGG 
                    UGGC AUGUUUU  UGG AGUG  G  AG UGGUUGU     G
                    ACUG UGCAAAA  ACC UCAC  C  UC ACCAACA     A
AGCGUCUUAACGGCUUUAUU^   -       AG   -    GU UU  -       UGUCG 
       110       100         90         80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-34_5p

mirBase accession

None

Sequence

0- UGGCAGUGUGGUUAGCUGGUUGU -23

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Co-mature sequence

Rph-Mir-34_3p

mirBase accession

None

Sequence

37- AACCACUUUCUGCACUCCAGAA -59

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