MirGeneDB ID | Xla-Mir-34-P3b2 |
Family name |
MIR-34 (all species) |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-34-P1a
Xla-Mir-34-P1b
Xla-Mir-34-P2a1a
Xla-Mir-34-P2a1b
Xla-Mir-34-P2a2a
Xla-Mir-34-P2a2b
Xla-Mir-34-P2b1a
Xla-Mir-34-P2b1b
Xla-Mir-34-P2b2a
Xla-Mir-34-P2b2b
Xla-Mir-34-P2c1
Xla-Mir-34-P2c2
Xla-Mir-34-P3a1
Xla-Mir-34-P3a2
Xla-Mir-34-P3b1
Xla-Mir-34-P3c1
Xla-Mir-34-P3c2
Xla-Mir-34-P3d1
Xla-Mir-34-P3d2
|
Orthologues |
Aae-Mir-34
Aga-Mir-34
Agr-Mir-34
Ami-Mir-34-P3b
Asu-Mir-34
Bge-Mir-34
Bta-Mir-34-P3b
Cbr-Mir-34
Cel-Mir-34
Cfa-Mir-34-P3b
Cin-Mir-34
Cja-Mir-34-P3b
Cli-Mir-34-P3b
Cmi-Mir-34-P3b
Cpi-Mir-34-P3b
Cte-Mir-34
Dan-Mir-34
Dlo-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dno-Mir-34-P3b
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Eca-Mir-34-P3b
Efe-Mir-34
Esc-Mir-34
Ete-Mir-34-P3b
Gga-Mir-34-P3b
Gja-Mir-34-P3b
Gpa-Mir-34
Gsp-Mir-34
Hmi-Mir-34
Hru-Mir-34
Hsa-Mir-34-P3b
Isc-Mir-34
Laf-Mir-34-P3b
Lch-Mir-34-P3b
Lgi-Mir-34
Lhy-Mir-34
Llo-Mir-34
Loc-Mir-34-P3b
Mdo-Mir-34-P3b
Mgi-Mir-34
Mml-Mir-34-P3b
Mmr-Mir-34-P3b
Mmu-Mir-34-P3b
Mom-Mir-34
Neu-Mir-34-P3b
Npo-Mir-34
Oan-Mir-34-P3b
Obi-Mir-34
Ocu-Mir-34-P3b
Ofu-Mir-34
Ovu-Mir-34
Pab-Mir-34-P3b
Pau-Mir-34
Pbv-Mir-34-P3b
Pca-Mir-34
Pdu-Mir-34
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Pve-Mir-34
Rno-Mir-34-P3b
Rph-Mir-34
Sha-Mir-34-P3b
Sko-Mir-34
Snu-Mir-34
Spt-Mir-34-P3b
Spu-Mir-34
Sto-Mir-34-P3b
Tca-Mir-34
Tur-Mir-34
War-Mir-34
Xtr-Mir-34-P3b
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030725.1: 160607480-160607541 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-34-P3b2) |
Mir-34-P3a2
NC_030725.1: 160607230-160607294 [+]
UCSC
Ensembl
Mir-34-P3b2
NC_030725.1: 160607480-160607541 [+]
UCSC
Ensembl
Mir-34-P3c2
NC_030725.1: 160607625-160607685 [+]
UCSC
Ensembl
Mir-34-P3d2
NC_030725.1: 160609358-160609416 [+]
UCSC
Ensembl
|
Seed |
AGUCGCU |
Precursor (pre-Mir +30nt flank) |
UGGGUGUAUAUCUAGGAACCUGCUUUUGGUAGGCAGUGUAGUUUUAGCUGGCUGCUUGCUAUUAAAUUCAGCAGUCGCUUAUACUCUGCCACCGACAACAGGGAUAAAAUUCAGCAACGGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGGUGUAUAUCUAGGAA--| CUU A U GUUUU U UGCUAU
CCUG UUGGU GGCAG GUA AGC GGCUGCU \
GGAC AGCCA CCGUC CAU UCG CUGACGA U
ACGGCAACGACUUAAAAUAG^ AAC - U AU--- - CUUAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Xla-Mir-34-P3b2_5p* |
mirBase accession | None |
Sequence |
0- AGGCAGUGUAGUUUUAGCUGGCUGCU -26
Get sequence
|
Mature sequence |
Xla-Mir-34-P3b2_3p |
mirBase accession | None |
Sequence |
41- CAGUCGCUUAUACUCUGCCAC -62
Get sequence
|