Mir-34-P3b2

MirGeneDB ID

Xla-Mir-34-P3b2

Family name

Species

MiRBase ID

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xtr-Mir-34-P3b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030725.1: 160607480-160607541 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b2)

Mir-34-P3a2 NC_030725.1: 160607230-160607294 [+] UCSC Ensembl
Mir-34-P3b2 NC_030725.1: 160607480-160607541 [+] UCSC Ensembl
Mir-34-P3c2 NC_030725.1: 160607625-160607685 [+] UCSC Ensembl
Mir-34-P3d2 NC_030725.1: 160609358-160609416 [+] UCSC Ensembl

Seed

AGUCGCU

Precursor
(pre-Mir +30nt flank)

UGGGUGUAUAUCUAGGAACCUGCUUUUGGUAGGCAGUGUAGUUUUAGCUGGCUGCUUGCUAUUAAAUUCAGCAGUCGCUUAUACUCUGCCACCGACAACAGGGAUAAAAUUCAGCAACGGCA

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Structure

        10          20        30        40        50        60   
UGGGUGUAUAUCUAGGAA--|   CUU     A     U   GUUUU   U       UGCUAU 
                    CCUG   UUGGU GGCAG GUA     AGC GGCUGCU      \
                    GGAC   AGCCA CCGUC CAU     UCG CUGACGA      U
ACGGCAACGACUUAAAAUAG^   AAC     -     U   AU---   -       CUUAAA 
120       110       100         90        80            70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-34-P3b2_5p*

mirBase accession

None

Sequence

0- AGGCAGUGUAGUUUUAGCUGGCUGCU -26

Get sequence

Mature sequence

Xla-Mir-34-P3b2_3p

mirBase accession

None

Sequence

41- CAGUCGCUUAUACUCUGCCAC -62

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