Mir-34-P3b

MirGeneDB ID

Cpi-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-449b

Paralogues

Cpi-Mir-34-P1 Cpi-Mir-34-P2a Cpi-Mir-34-P2b Cpi-Mir-34-P3a Cpi-Mir-34-P3c Cpi-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584718: 641059-641119 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3a JH584718: 640084-640149 [+] UCSC Ensembl
Mir-34-P3b JH584718: 641059-641119 [+] UCSC Ensembl
Mir-34-P3c JH584718: 641224-641281 [+] UCSC Ensembl
Mir-34-P3d JH584718: 642854-642912 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GUUGCCUUGCUUAGGCUCCUUGUGUCUGGUAGGCAGUGUACUGUUAGCUGGCUGCUUUGUGUGAAUCUAGCAGUCUCUACUACACUGUCACCUGCUGCAGGGCCAACUCCCUGUUAUUUUA

Get precursor sequence

Structure

        10          20         30        40        50        60  
GUUGCCUUGCUUAGGCU--      -| CU   A         CUGU   CU      UUUGUG 
                   CCUUGU GU  GGU GGCAGUGUA    UAG  GGCUGC      U
                   GGGACG CG  CCA CUGUCACAU    AUC  CUGACG      G
AUUUUAUUGUCCCUCAACC      U^ U-   -         C---   U-      AUCUAA 
 .       110       100         90         80            70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Te	Te	Te	To

Mature sequence

Cpi-Mir-34-P3b_5p

mirBase accession

MIMAT0037880

Sequence

0- AGGCAGUGUACUGUUAGCUGGCUGC -25

Get sequence

Star sequence

Cpi-Mir-34-P3b_3p*

mirBase accession

None

Sequence

40- CAGUCUCUACUACACUGUCAC -61

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