MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-449b
Paralogues Oan-Mir-34-P1  Oan-Mir-34-P2a  Oan-Mir-34-P2b  Oan-Mir-34-P3a  Oan-Mir-34-P3c 
Orthologues Aae-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Obi-Mir-34  Ocu-Mir-34-P3b  Ovu-Mir-34  Pbv-Mir-34-P3b  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041728.1: 7246184-7246244 [-]
Clustered miRNAs
(< 50kb from Mir-34-P3b)
Mir-34-P3c NC_041728.1: 7246045-7246105 [-]
Mir-34-P3b NC_041728.1: 7246184-7246244 [-]
Mir-34-P3a NC_041728.1: 7247559-7247619 [-]
Precursor
(pre-Mir +30nt flank)
AGAGCAUCAGUGACAUUACCUGGGUCAAGUAGGCAGUGUGAUGUUUGCUGGCUGCUUUGAAUCGAUUCAGCAGCCACCGUUACUCUGCCACUUGCUACUAGGCGGACUCAUCCUUUCGAGC
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Structure
        10         20         30        40           50         
AGAGCAUCAGUGACAUUA-     GU-     A     U      U---|     GCUGCUUU 
                   CCUGG   CAAGU GGCAG GUGAUG    UUGCUG        \
                   GGAUC   GUUCA CCGUC CAUUGC    GACGAC        G
CGAGCUUUCCUACUCAGGC     AUC     -     U      CACC^     UUAGCUAA 
 .       110       100        90         80        70        60
Deep sequencing
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CommentThis is a Group 2 in human according to Kim et al but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-34-P3b_5p

mirBase accessionMIMAT0007013
Sequence
0- AGGCAGUGUGAUGUUUGCUGG -21
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Co-mature sequence

Oan-Mir-34-P3b_3p

mirBase accessionMIMAT0007014
Sequence
40- CAGCCACCGUUACUCUGCCAC -61
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