MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-34-P3b

Family name MIR-34 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-34-P1  Sha-Mir-34-P2a  Sha-Mir-34-P2b  Sha-Mir-34-P3c  Sha-Mir-34-P3d 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cin-Mir-34  Cja-Mir-34-P3b  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3b  Isc-Mir-34  Laf-Mir-34-P3b  Lch-Mir-34-P3b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mgi-Mir-34  Mml-Mir-34-P3b  Mmr-Mir-34-P3b  Mmu-Mir-34-P3b  Mom-Mir-34  Neu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3b  Pau-Mir-34  Pbv-Mir-34-P3b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3b  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(DEVIL_add)		 GL841771.1: 107667-107727 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3b)		 Mir-34-P3b GL841771.1: 107667-107727 [+] UCSC Ensembl
Mir-34-P3c GL841771.1: 107807-107867 [+] UCSC Ensembl
Mir-34-P3d GL841771.1: 109094-109154 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AGUGGGCUGACCCCAUUUCCUGGGUCAGGUAGGCAGUGUGCUGUAAGCUGGCUGCUUGGGUUCAAUUGAGCAGUCAGGACUAGCCUGCCACUUGCUCCUGGACUGGUUCAUCUUUUUCAGU
Get precursor sequence
Structure
        10          20        30        40        50        60  
AGUGGGCUGACCCCAUU--|  U  GU     A     UGU    UAAG      GCUUGGGU 
                   UCC GG  CAGGU GGCAG   GCUG    CUGGCU        U
                   AGG CC  GUUCA CCGUC   CGAU    GACUGA        C
UGACUUUUUCUACUUGGUC^  U  UC     -     ---    CAG-      CGAGUUAA 
 .       110       100        90            80         70
Deep sequencing
Go to detailed chart
CommentThis is a Group 2 in human according to Kim et al but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-34-P3b_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUGCUGUAAGCUGGCU -23
Get sequence
Star sequence

Sha-Mir-34-P3b_3p*
mirBase accessionNone
Sequence 
40- CAGUCAGGACUAGCCUGCCAC -61
Get sequence