Mir-34-P3b

MirGeneDB ID

Ami-Mir-34-P3b

Family name

MIR-34 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-449b

Paralogues

Ami-Mir-34-P1 Ami-Mir-34-P2a Ami-Mir-34-P2b Ami-Mir-34-P3a Ami-Mir-34-P3c Ami-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017712138.1: 29165493-29165553 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3d NW_017712138.1: 29164110-29164168 [-] UCSC
Mir-34-P3c NW_017712138.1: 29165345-29165403 [-] UCSC
Mir-34-P3b NW_017712138.1: 29165493-29165553 [-] UCSC
Mir-34-P3a NW_017712138.1: 29165972-29166036 [-] UCSC

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CUUGCUUGAGUAGCGCUCCCUGUGUCUGGUAGGCAGUGUACUGUUAGCUGGCUGCUUUGUGUGAAUCUAGCAGUCGCUACUGCACUGUCAACAGCUGCAGGGGCAGCUCACUGUGUAUUUU

Get precursor sequence

Structure

        10          20        30        40        50        60  
CUUGCUUGAGUAGCGCU--|      U   GUA         CUGU    U      UUUGUG 
                   CCCUGUG CUG   GGCAGUGUA    UAGC GGCUGC      U
                   GGGACGU GAC   CUGUCACGU    AUCG CUGACG      G
UUUUAUGUGUCACUCGACG^      C   AA-         C---    -      AUCUAA 
 .       110       100        90         80            70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Ami-Mir-34-P3b_5p

mirBase accession

MIMAT0038282

Sequence

0- AGGCAGUGUACUGUUAGCUGGCUGC -25

Get sequence

Star sequence

Ami-Mir-34-P3b_3p* (predicted)

mirBase accession

None

Sequence

40- CAGUCGCUACUGCACUGUCAA -61

Get sequence