MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-34-P3a

Family name MIR-34 (all species)
Seed UGGCAGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-449c
Paralogues Ami-Mir-34-P1  Ami-Mir-34-P2a  Ami-Mir-34-P2b  Ami-Mir-34-P3b  Ami-Mir-34-P3c  Ami-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Loc-Mir-34-P3a  Mmu-Mir-34-P3a  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ovu-Mir-34  Pbv-Mir-34-P3a  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3a  Sko-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Xbo-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017712138.1: 29165972-29166036 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-34-P3a)
Mir-34-P3d NW_017712138.1: 29164110-29164168 [-] UCSC
Mir-34-P3c NW_017712138.1: 29165345-29165403 [-] UCSC
Mir-34-P3b NW_017712138.1: 29165493-29165553 [-] UCSC
Mir-34-P3a NW_017712138.1: 29165972-29166036 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGUAGAGACUGAGUAUGAGAAUGUUUCAGUUUGGCAGUGCAUUGCUAGCUGGCUGUUGUGUACGUGUGUUAACAGUUGCUAGCUGUACUCCAUAUUGUUGCAUUCAGAAACAUCAUGGAAAUGGC
Get precursor sequence
Structure
        10          20        30        40        50        60    
AGUAGAGACUGAGUAUGA--|     UU    U   C      UU      U       GUGUAC 
                    GAAUGU  CAGU UGG AGUGCA  GCUAGC GGCUGUU      \
                    CUUACG  GUUA ACC UCAUGU  CGAUCG UUGACAA      G
CGGUAAAGGUACUACAAAGA^     UU    U   -      --      -       UUGUGU 
   120       110       100        90           80         70
Deep sequencing
Go to detailed chart
CommentThe Drosha cut appears to be shifted -1 relative to other vertebrates.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Ami-Mir-34-P3a_5p

mirBase accessionMIMAT0038283
Sequence
0- UUGGCAGUGCAUUGCUAGCUGGCUGUU -27
Get sequence
Star sequence

Ami-Mir-34-P3a_3p* (predicted)

mirBase accessionNone
Sequence
42- CAGUUGCUAGCUGUACUCCAUAU -65
Get sequence