Mir-34-P3a

MirGeneDB ID

Bta-Mir-34-P3a

Family name

MIR-34 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-449c

Paralogues

Bta-Mir-34-P1 Bta-Mir-34-P2a Bta-Mir-34-P2b Bta-Mir-34-P3b Bta-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3a-v1 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3a Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037347.1: 23941721-23941783 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a)

Mir-34-P3a NC_037347.1: 23941721-23941783 [+] UCSC Ensembl
Mir-34-P3b NC_037347.1: 23943207-23943267 [+] UCSC Ensembl
Mir-34-P3c NC_037347.1: 23943328-23943389 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAAAAAAAAUGAAGCUUGAAUGUGUCAGGUAGGCAGUGCAUCUCUAGCUGGCUGUUAAAAUUUCUUUUUAACAGUUGCUAGUUGCACUCCCCUCUGUUGCAUUCAUAAUCUUGCCUUCCAAAG

Get precursor sequence

Structure

        10          20        30        40        50        60   
AAAAAAAAAUGAAGCUU--|      U    UA  C      UCU     U       AAAAUU 
                   GAAUGUG CAGG  GG AGUGCA   CUAGC GGCUGUU      \
                   CUUACGU GUCU  CC UCACGU   GAUCG UUGACAA      U
GAAACCUUCCGUUCUAAUA^      U    CC  -      U--     -       UUUUUC 
 120       110       100        90           80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-34-P3a_5p

mirBase accession

MIMAT0009322

Sequence

0- AGGCAGUGCAUCUCUAGCUGGCUGUU -26

Get sequence

Proposed targets

TargetScanVert: bta-miR-449c

Star sequence

Bta-Mir-34-P3a_3p*

mirBase accession

None

Sequence

41- CAGUUGCUAGUUGCACUCCCCU -63

Get sequence