MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-34-P3a

Family name MIR-34 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-34-P1  Tgu-Mir-34-P2a  Tgu-Mir-34-P2b  Tgu-Mir-34-P3c  Tgu-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)		 Z: 55413848-55413910 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3d Z: 55411777-55411835 [-] UCSC Ensembl
Mir-34-P3c Z: 55412726-55412782 [-] UCSC Ensembl
Mir-34-P3a Z: 55413848-55413910 [-] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AACUAAUGGCCAAAACUGAAGAGAACAGUCUGGCAGUGCAUGUUAGCUGGCUGUUGUCCCUUAUGUGUCCACAGCUGCUAUCUGCACUCCAUAUUGUUUCAUUCAAAAGCAUCAUGAAAAACU
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Structure
        10          20        30        40        50        60  
AACUAAUGGCCAAAACU--|  GA       C   C      UGU    U      UGUCCCU 
                   GAA  GAACAGU UGG AGUGCA   UAGC GGCUGU       U
                   CUU  UUUGUUA ACC UCACGU   AUCG UCGACA       A
UCAAAAAGUACUACGAAAA^  AC       U   -      CU-    -      CCUGUGU 
 120       110       100        90          80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-34-P3a_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGCAUGUUAGCUGGCUGUU -25
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Star sequence

Tgu-Mir-34-P3a_3p* (predicted)
mirBase accessionNone
Sequence 
41- CAGCUGCUAUCUGCACUCCAUA -63
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