MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-34-P3a

Family name MIR-34 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-34-P1  Sto-Mir-34-P2a  Sto-Mir-34-P2b  Sto-Mir-34-P3b  Sto-Mir-34-P3c  Sto-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003427355_STO_add)		 BFAA01003480.1: 102882-102945 [+]
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3a BFAA01003480.1: 102882-102945 [+]
Mir-34-P3b BFAA01003480.1: 106805-106867 [+]
Mir-34-P3c BFAA01003480.1: 106949-107010 [+]
Mir-34-P3d BFAA01003480.1: 107524-107582 [+]
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
GGAAGGGAAGGCAAGAAAGAUGUGGCGGUUAGGCAGUGUACUGCUAGCUGGCUGUUGUGUCUGACAGGUCAGCAGCUGCUAGCUACACUCCACACUGCUGCAUCUGAGAGCACUUCAUCAUCAG
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Structure
        10          20        30        40        50        60   
GGAAGGGAAGGCAAGAA--|    UG     UA  C      CU      U      UGUGUCU 
                   AGAUG  GCGGU  GG AGUGUA  GCUAGC GGCUGU       G
                   UCUAC  CGUCA  CC UCACAU  CGAUCG UCGACG       A
GACUACUACUUCACGAGAG^    GU     CA  -      --      -      ACUGGAC 
  120       110       100        90           80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Sto-Mir-34-P3a_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUACUGCUAGCUGGCUGU -25
Get sequence
Star sequence

Sto-Mir-34-P3a_3p*
mirBase accessionNone
Sequence 
43- AGCUGCUAGCUACACUCCACA -64
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