Mir-34-P3a

MirGeneDB ID

Sto-Mir-34-P3a

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-34-P1 Sto-Mir-34-P2a Sto-Mir-34-P2b Sto-Mir-34-P3b Sto-Mir-34-P3c Sto-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Hsa-Mir-34-P3a-v1 Hsa-Mir-34-P3a-v2 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Loc-Mir-34-P3a Mmu-Mir-34-P3a Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ovu-Mir-34 Pbv-Mir-34-P3a Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Rno-Mir-34-P3a Sko-Mir-34 Spu-Mir-34 Tca-Mir-34 Tgu-Mir-34-P3a Xbo-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01003480.1: 102882-102945 [+]

Precursor
(pre-Mir +30nt flank)

GGAAGGGAAGGCAAGAAAGAUGUGGCGGUUAGGCAGUGUACUGCUAGCUGGCUGUUGUGUCUGACAGGUCAGCAGCUGCUAGCUACACUCCACACUGCUGCAUCUGAGAGCACUUCAUCAUCAG

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Structure

        10          20        30        40        50        60   
GGAAGGGAAGGCAAGAA--|    UG     UA  C      CU      U      UGUGUCU 
                   AGAUG  GCGGU  GG AGUGUA  GCUAGC GGCUGU       G
                   UCUAC  CGUCA  CC UCACAU  CGAUCG UCGACG       A
GACUACUACUUCACGAGAG^    GU     CA  -      --      -      ACUGGAC 
  120       110       100        90           80         70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Sto-Mir-34-P3a_5p

mirBase accession

None

Sequence

0- AGGCAGUGUACUGCUAGCUGGCUGU -25

Get sequence

Star sequence

Sto-Mir-34-P3a_3p*

mirBase accession

None

Sequence

43- AGCUGCUAGCUACACUCCACA -64

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