MirGeneDB ID | Lch-Mir-34-P3a |
---|---|
Family name | MIR-34 (all species) |
Seed | GGCAGUG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-34-P1 Lch-Mir-34-P2a Lch-Mir-34-P2b Lch-Mir-34-P3b Lch-Mir-34-P3d |
Orthologues | Aae-Mir-34 Aca-Mir-34-P3a Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Hsa-Mir-34-P3a-v1 Hsa-Mir-34-P3a-v2 Isc-Mir-34 Lgi-Mir-34 Loc-Mir-34-P3a Mmu-Mir-34-P3a Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ovu-Mir-34 Pbv-Mir-34-P3a Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Rno-Mir-34-P3a Sko-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Xbo-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH127011.1: 782676-782741 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AAUUGAGAAAAAGCAAGGAAUGCUUCAGUUAGGCAGUGUAUUGCUAGCUGGCUGUUGUGUAUUUGACAGGUCAACAGCUGCUGGGUACACUCCACAUUGCUGCAUUCAAUGCACAAGCGUGGAAAUGet precursor sequence |
Structure | 10 20 30 40 50 60 AAUUGAGAAAAAGCAAG--| UU UA C UG U GUGUAUU GAAUGC CAGU GG AGUGUAU CUAGC GGCUGUU U CUUACG GUUA CC UCACAUG GGUCG UCGACAA G UAAAGGUGCGAACACGUAA^ UC CA - -- - CUGGACA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Mature sequence | Lch-Mir-34-P3a_5p (predicted) |
mirBase accession | None |
Sequence |
0- AGGCAGUGUAUUGCUAGCUGGCUGUU -26
Get sequence
|
Star sequence | Lch-Mir-34-P3a_3p* (predicted) |
mirBase accession | None |
Sequence |
44- CAGCUGCUGGGUACACUCCACA -66
Get sequence
|