MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-34-P3a

Family name MIR-34 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-34-P1  Lch-Mir-34-P2a  Lch-Mir-34-P2b  Lch-Mir-34-P3b  Lch-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127011.1: 782676-782741 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3a JH127011.1: 782676-782741 [+] Ensembl
Mir-34-P3b JH127011.1: 783378-783440 [+] Ensembl
Mir-34-P3d JH127011.1: 783929-783987 [+] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AAUUGAGAAAAAGCAAGGAAUGCUUCAGUUAGGCAGUGUAUUGCUAGCUGGCUGUUGUGUAUUUGACAGGUCAACAGCUGCUGGGUACACUCCACAUUGCUGCAUUCAAUGCACAAGCGUGGAAAU
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Structure
        10          20        30        40        50        60    
AAUUGAGAAAAAGCAAG--|     UU    UA  C       UG     U       GUGUAUU 
                   GAAUGC  CAGU  GG AGUGUAU  CUAGC GGCUGUU       U
                   CUUACG  GUUA  CC UCACAUG  GGUCG UCGACAA       G
UAAAGGUGCGAACACGUAA^     UC    CA  -       --     -       CUGGACA 
    120       110       100         90          80         70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Lch-Mir-34-P3a_5p (predicted)
mirBase accessionNone
Sequence 
0- AGGCAGUGUAUUGCUAGCUGGCUGUU -26
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Star sequence

Lch-Mir-34-P3a_3p* (predicted)
mirBase accessionNone
Sequence 
44- CAGCUGCUGGGUACACUCCACA -66
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