MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-34-P3d

Family name MIR-34 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-34-P1  Lch-Mir-34-P2a  Lch-Mir-34-P2b  Lch-Mir-34-P3a  Lch-Mir-34-P3b 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mal-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2  Xtr-Mir-34-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127011.1: 783929-783987 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3d)		 Mir-34-P3a JH127011.1: 782676-782741 [+] Ensembl
Mir-34-P3b JH127011.1: 783378-783440 [+] Ensembl
Mir-34-P3d JH127011.1: 783929-783987 [+] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
CAAAGCCAAUUAAAAGUAUGUGCGGUGAUUAGGCAGUGUAAUGUUAGCUGACUGUGAUUUACAUAUGAGCAACUACAUGCACUAUCAUAUUUGCGCAUGAACAAUGUUUCUCACGAAGA
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Structure
        10            20           30         40        50        
CAAAGCCAAUUAAAAGU----       ---|    U  -   G    AU   A   GACUGUGA 
                     AUGUGCG   GUGAU AG GCA UGUA  GUU GCU        U
                     UACGCGU   UACUA UC CGU ACAU  CAA CGA        U
AGAAGCACUCUUUGUAACAAG       UUA^    -  A   -    --   -   GUAUACAU 
       110       100        90         80            70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Lch-Mir-34-P3d_5p (predicted)
mirBase accessionNone
Sequence 
0- AGGCAGUGUAAUGUUAGCUGAC -22
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Star sequence

Lch-Mir-34-P3d_3p* (predicted)
mirBase accessionNone
Sequence 
36- GAGCAACUACAUGCACUAUCAUA -59
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