Mir-34-P3d

MirGeneDB ID

Xtr-Mir-34-P3d

Family name

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-34-P1 Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2 Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2 Xtr-Mir-34-P3a Xtr-Mir-34-P3b Xtr-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3d Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cli-Mir-34-P3d Cmi-Mir-34-P3d Cpi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gmo-Mir-34-P3d Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3d Mal-Mir-34-P3d Mdo-Mir-34-P3d Mgi-Mir-34 Mom-Mir-34 Mun-Mir-34-P3d Neu-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pbv-Mir-34-P3d Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3d Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr1: 178900526-178900583 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3d)

Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl
Mir-34-P3d chr1: 178900526-178900583 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AUAAACAAAGUUUUUGUAUGUGUGGUGAUUAGGCAGUGUAUUGUUAGUUUGCUGUUGAAACUAACCAGCAACUACGUACACUACCACAUCAGCACAUGACUUUUCAUCUUGUCACAUA

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Structure

        10          20        30        40        50          
AUAAACAAAGUUUUUGUAU--|    G    UA  C       U  U    U    UUGAA 
                     GUGUG UGAU  GG AGUGUAU GU AGUU GCUG     \
                     UACAC ACUA  CC UCACAUG CA UCAA CGAC     A
AUACACUGUUCUACUUUUCAG^    G    CA  A       -  -    -    CAAUC 
      110       100        90        80          70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-34-P3d_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAUUGUUAGUUUGCUGU -25

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Star sequence

Xtr-Mir-34-P3d_3p* (predicted)

mirBase accession

None

Sequence

38- CAACUACGUACACUACCACA -58

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