| MirGeneDB ID | Spt-Mir-34-P3d |
|---|---|
| Family name | MIR-34 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-34-P1 Spt-Mir-34-P2a Spt-Mir-34-P2b Spt-Mir-34-P3b Spt-Mir-34-P3c |
| Orthologues | Aae-Mir-34 Aca-Mir-34-P3d Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cli-Mir-34-P3d Cmi-Mir-34-P3d Cpi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gmo-Mir-34-P3d Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3d Mal-Mir-34-P3d Mdo-Mir-34-P3d Mgi-Mir-34 Mom-Mir-34 Mun-Mir-34-P3d Neu-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pbv-Mir-34-P3d Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2 Xtr-Mir-34-P3d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012145.1: 2529985-2530043 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-34-P3d) |
Mir-34-P3d
QEPC01012145.1: 2529985-2530043 [-]
UCSC
Ensembl
Mir-34-P3c QEPC01012145.1: 2531952-2532013 [-] UCSC Ensembl Mir-34-P3b QEPC01012145.1: 2532133-2532193 [-] UCSC Ensembl |
| Seed | GGCAGUG |
| Precursor (pre-Mir +30nt flank) |
UGGAGGGCUGGCUUUCUGUGUGUGGUGAUUAGGCAGUGUAUUGUUAGUUUGCUGUUGCUCACAUUCCAGCAACUAAAUACACUGCCACAUUAGCACAGCAUGUCUGCCUCAUUGCUUAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGGAGGGCUGGCUUUCU- -| G UA GU U UUGCU GUG UGUG UGAU GGCAGUGUAUU UAGUU GCUG C UAC ACAC AUUA CCGUCACAUAA AUCAA CGAC A GAUUCGUUACUCCGUCUG G^ G CA -- - CUUAC 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-34-P3d_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGCAGUGUAUUGUUAGUUUGCUG -24
Get sequence
|
| Star sequence | Spt-Mir-34-P3d_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- GCAACUAAAUACACUGCCACA -59
Get sequence
|
