Mir-34-P3d

MirGeneDB ID

Cpi-Mir-34-P3d

Family name

MIR-34 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-449d

Paralogues

Cpi-Mir-34-P1 Cpi-Mir-34-P2a Cpi-Mir-34-P2b Cpi-Mir-34-P3a Cpi-Mir-34-P3b Cpi-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3d Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cli-Mir-34-P3d Cmi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gmo-Mir-34-P3d Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3d Mal-Mir-34-P3d Mdo-Mir-34-P3d Mgi-Mir-34 Mom-Mir-34 Mun-Mir-34-P3d Neu-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pbv-Mir-34-P3d Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3d Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2 Xtr-Mir-34-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584718: 642854-642912 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3d)

Mir-34-P3a JH584718: 640084-640149 [+] UCSC Ensembl
Mir-34-P3b JH584718: 641059-641119 [+] UCSC Ensembl
Mir-34-P3c JH584718: 641224-641281 [+] UCSC Ensembl
Mir-34-P3d JH584718: 642854-642912 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAUAGAACUAGUUUUGUGUAUGUGCUGAUUAGGCAGUGUAUUGUUAGUUAGCUGUUGUUCACAUACCAGCAACUAAAUACGCUUCCACAUUAGCACACGACCUUGCAUCAAUGUUUAGA

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Structure

        10        20          30        40        50        60
AAUAGAACUAGUUUUGUGUA--|        UA  C        GU     A    UUGUU 
                      UGUGCUGAU  GG AGUGUAUU  UAGUU GCUG     C
                      ACACGAUUA  CC UCGCAUAA  AUCAA CGAC     A
AGAUUUGUAACUACGUUCCAGC^        CA  U        --     -    CAUAC 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Te	Te	Te	To

Mature sequence

Cpi-Mir-34-P3d_5p

mirBase accession

MIMAT0037882

Sequence

0- AGGCAGUGUAUUGUUAGUUAGCUG -24

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Star sequence

Cpi-Mir-34-P3d_3p*

mirBase accession

None

Sequence

38- GCAACUAAAUACGCUUCCACA -59

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