Mir-34-P3d

MirGeneDB ID

Cmi-Mir-34-P3d

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-34-P1 Cmi-Mir-34-P2a Cmi-Mir-34-P2b Cmi-Mir-34-P3a Cmi-Mir-34-P3b Cmi-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3d Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3d Cpi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gmo-Mir-34-P3d Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Loc-Mir-34-P3d Mal-Mir-34-P3d Mdo-Mir-34-P3d Mun-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ovu-Mir-34 Pbv-Mir-34-P3d Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Spt-Mir-34-P3d Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Xbo-Mir-34 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2 Xtr-Mir-34-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635876.1: 5895211-5895269 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGGGUGAUUGGGAGUGUGUGGGUUGAUUAGGCAGUGUAAUGUUAGCUGGCUGCAAUGUAGGAAUCAGCAGCUACAAGCACUACCACAUUAGCUCAUGAUUUCACAACAACAUAAAGA

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Structure

        10          20        30        40        50        60
GCAGGGUGAUUGGGAGUGU--|         UA  C     AA   U     G  GCAAUG 
                     GUGGGUUGAU  GG AGUGU  UGU AGCUG CU      U
                     UACUCGAUUA  CC UCACG  ACA UCGAC GA      A
AGAAAUACAACAACACUUUAG^         CA  A     A-   -     -  CUAAGG 
       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-34-P3d_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAAUGUUAGCUGGCU -23

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Co-mature sequence

Cmi-Mir-34-P3d_3p

mirBase accession

None

Sequence

38- GCAGCUACAAGCACUACCACA -59

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