Mir-34-P2a

MirGeneDB ID

Cmi-Mir-34-P2a

Family name

MIR-34 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-34-P1 Cmi-Mir-34-P2b Cmi-Mir-34-P3a Cmi-Mir-34-P3b Cmi-Mir-34-P3c Cmi-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2a Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636438.1: 16309-16368 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a)

Mir-34-P2b KI636438.1: 15023-15082 [-] UCSC Ensembl
Mir-34-P2a KI636438.1: 16309-16368 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CUGGGCUGGACUGGUCUGAGCUUACUUUGCAGGCAGUGUAGUUAGCUGAUUGUGGAGCUAAGGGAACAAUCGCUAACUCACACUACCAUCAAAAGAGGCUACAACAUCCGCAACCCCGUC

Get precursor sequence

Structure

        10          20        30         40        50         
CUGGGCUGGACUGGUCUG--     AC    CA  C     -|      U      GGAGC 
                    AGCUU  UUUG  GG AGUGU AGUUAGC GAUUGU     U
                    UCGGA  AAAC  CC UCACA UCAAUCG CUAACA     A
CUGCCCCAACGCCUACAACA     GA    UA  A     C^      -      AGGGA 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-34-P2a_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

Get sequence

Star sequence

Cmi-Mir-34-P2a_3p*

mirBase accession

None

Sequence

37- AAUCGCUAACUCACACUACCAUC -60

Get sequence