MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-34-P2a

Family name MIR-34 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-34-P1  Cmi-Mir-34-P2b  Cmi-Mir-34-P3a  Cmi-Mir-34-P3b  Cmi-Mir-34-P3c  Cmi-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cin-Mir-34  Cja-Mir-34-P2a  Cli-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Eca-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P2a  Isc-Mir-34  Laf-Mir-34-P2a  Lch-Mir-34-P2a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mgi-Mir-34  Mml-Mir-34-P2a  Mmr-Mir-34-P2a  Mmu-Mir-34-P2a  Mom-Mir-34  Mun-Mir-34-P2a  Neu-Mir-34-P2a-v1  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P2a  Pau-Mir-34  Pbv-Mir-34-P2a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P2a  Rph-Mir-34  Sha-Mir-34-P2a  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636438.1: 16309-16368 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2a)		 Mir-34-P2b KI636438.1: 15023-15082 [-] UCSC Ensembl
Mir-34-P2a KI636438.1: 16309-16368 [-] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
CUGGGCUGGACUGGUCUGAGCUUACUUUGCAGGCAGUGUAGUUAGCUGAUUGUGGAGCUAAGGGAACAAUCGCUAACUCACACUACCAUCAAAAGAGGCUACAACAUCCGCAACCCCGUC
Get precursor sequence
Structure
        10          20        30         40        50         
CUGGGCUGGACUGGUCUG--     AC    CA  C     -|      U      GGAGC 
                    AGCUU  UUUG  GG AGUGU AGUUAGC GAUUGU     U
                    UCGGA  AAAC  CC UCACA UCAAUCG CUAACA     A
CUGCCCCAACGCCUACAACA     GA    UA  A     C^      -      AGGGA 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-34-P2a_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Star sequence

Cmi-Mir-34-P2a_3p*
mirBase accessionNone
Sequence 
37- AAUCGCUAACUCACACUACCAUC -60
Get sequence