Mir-34-P2a1a

MirGeneDB ID

Xla-Mir-34-P2a1a

Family name

Species

MiRBase ID

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2a Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xtr-Mir-34-P2a1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030736.1: 77170709-77170770 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a1a)

Mir-34-P2b2a NC_030736.1: 77161920-77161974 [-] UCSC Ensembl
Mir-34-P2a2b NC_030736.1: 77162218-77162279 [-] UCSC Ensembl
Mir-34-P2a1a NC_030736.1: 77170709-77170770 [+] UCSC Ensembl
Mir-34-P2c1 NC_030736.1: 77170709-77170769 [+] UCSC Ensembl
Mir-34-P2b1a NC_030736.1: 77172141-77172195 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

ACAUGUCUGUCUGAACUGUGUUAGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAAAUCAAAUGUGCAAUCACUAGCUAAACUGCCAUCAAAACUCAACAUGAAAGUGCUGCAUGGAUAC

Get precursor sequence

Structure

        10          20        30         40        50        60
ACAUGUCUGUCUGAACU--     AG     CA-|     G       C       GUUAAA 
                   GUGUU  GUUUU   GGCAGU UAGUUAG UGAUUGU      U
                   UACAA  CAAAA   CCGUCA AUCGAUC ACUAACG      C
CAUAGGUACGUCGUGAAAG     CU     CUA^     A       -       UGUAAA 
120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em

Mature sequence

Xla-Mir-34-P2a1a_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

Get sequence

Star sequence

Xla-Mir-34-P2a1a_3p*

mirBase accession

None

Sequence

39- AAUCACUAGCUAAACUGCCAUCA -62

Get sequence