MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-34-P3c2

Family name MIR-34 (all species)
Seed GGCAGUG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-449
Paralogues Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xla-Mir-34-P2c1  Xla-Mir-34-P2c2  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xla-Mir-34-P3c1  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Hsa-Mir-34-P3c  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mml-Mir-34-P3c  Mmu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ovu-Mir-34  Pbv-Mir-34-P3c  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3c  Sha-Mir-34-P3c  Sko-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Xbo-Mir-34  Xtr-Mir-34-P3c 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030725.1: 160607625-160607685 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUUCCCUGAAGAUCUGUGUUUAGAGGGAAGGCAGUGUAAUGUUAGCUGGUUGGAAAGUAUCAGACACCGGUUAACUUACACCUGCCCCCCUUCUUCACAUUUGUUCGUCGACUGAUCAA
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Structure
        10          20        30         40        50          
CCUUUCCCUGAAGAUCU--    UU      AA    -|     U          UGGAAAG 
                   GUGU  AGAGGG  GGCA GUGUAA GUUAGCUGGU       \
                   UACA  UCUUCC  CCGU CACAUU CAAUUGGCCA       U
AACUAGUCAGCUGCUUGUU    CU      CC    C^     -          CAGACUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-34-P3c2_5p

mirBase accessionMIMAT0046603
Sequence
0- AGGCAGUGUAAUGUUAGCUGGU -22
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Star sequence

Xla-Mir-34-P3c2_3p*

mirBase accessionMIMAT0046604
Sequence
39- CGGUUAACUUACACCUGCCCCC -61
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