MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-34-P3c

Family name MIR-34 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-449a
Paralogues Rno-Mir-34-P1  Rno-Mir-34-P2a  Rno-Mir-34-P2b  Rno-Mir-34-P3a  Rno-Mir-34-P3b 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cin-Mir-34  Cja-Mir-34-P3c  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3c  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3c  Isc-Mir-34  Laf-Mir-34-P3c  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mgi-Mir-34  Mml-Mir-34-P3c  Mmr-Mir-34-P3c  Mmu-Mir-34-P3c  Mom-Mir-34  Neu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3c  Pau-Mir-34  Pbv-Mir-34-P3c  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3c  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr2: 44897616-44897677 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3c)		 Mir-34-P3a chr2: 44896085-44896147 [+] UCSC Ensembl
Mir-34-P3b chr2: 44897502-44897562 [+] UCSC Ensembl
Mir-34-P3c chr2: 44897616-44897677 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
UUAAUGAAGUUUUAGCUGUGUGCGAUGGGUUGGCAGUGUAUUGUUAGCUGGUUGAGUAUGUAAAAGGCACCAGCUAACAUGCAACUGCUCUCCUAUUGCACAUACAAUCAACAGCAGGAUGC
Get precursor sequence
Structure
        10          20        30         40        50        60
UUAAUGAAGUUUUAGCU--            UU     -|    U          UGAGUAU 
                   GUGUGCGAUGGG  GGCAG UGUAU GUUAGCUGGU       G
                   UACACGUUAUCC  UCGUC ACGUA CAAUCGACCA       U
CGUAGGACGACAACUAACA            UC     A^    -          CGGAAAA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
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Mature sequence

Rno-Mir-34-P3c_5p
mirBase accessionMIMAT0001543
Sequence 
0- UGGCAGUGUAUUGUUAGCUGGU -22
Get sequence
Proposed targets microrna.org: MIMAT0001543
TargetScanVert: rno-miR-449a-5p
miRDB: MIMAT0001543
Star sequence

Rno-Mir-34-P3c_3p*
mirBase accessionMIMAT0017181
Sequence 
40- CAGCUAACAUGCAACUGCUCUC -62
Get sequence
Proposed targets TargetScanVert: rno-miR-449a-3p
miRDB: MIMAT0017181