Mir-34-P3c

MirGeneDB ID

Gmo-Mir-34-P3c

Family name

MIR-34 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-449b

Paralogues

Gmo-Mir-34-P1 Gmo-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4451: 23964-24018 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3d GeneScaffold_4451: 23653-23711 [-] UCSC Ensembl
Mir-34-P3c GeneScaffold_4451: 23964-24018 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GUUCUAUUUUUUAAGUUGUGGCUGGUUUGGAGGCAGUGCAAUGUUAGUUGACGUAUUAUUGGUCAAUUAACAAUGCUCUGGAUCCUGACUUGCUACCUGAGACUACAUCACACUA

Get precursor sequence

Structure

        10          20        30        40        50       
GUUCUAUUUUUUAAGUU--|    U    U   GG   U   A           GUAU 
                   GUGGC GGUU GGA  CAG GCA UGUUAGUUGAC    \
                   CAUCG UCAG CCU  GUC CGU ACAAUUAACUG    U
AUCACACUACAUCAGAGUC^    U    U   AG   U   A           GUUA 
   110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-34-P3c_5p

mirBase accession

MIMAT0044287

Sequence

0- AGGCAGUGCAAUGUUAGUUGAC -22

Get sequence

Star sequence

Gmo-Mir-34-P3c_3p*

mirBase accession

None

Sequence

33- CAAUUAACAAUGCUCUGGAUCC -55

Get sequence