MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-34-P3c

Family name MIR-34 (all species)
Seed GGCAGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-449a
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3a  Xtr-Mir-34-P3b  Xtr-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Hsa-Mir-34-P3c  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mml-Mir-34-P3c  Mmu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ovu-Mir-34  Pbv-Mir-34-P3c  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3c  Sha-Mir-34-P3c  Sko-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Xbo-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr1: 178899884-178899944 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3c)		 Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUUCCCUAAAGAUCUGUGUUUAGAAGGAAGGCAGUGUAAUGUUAGCUGGUUGGAAAAUAGCAGACACUGGUUAACUUACACCUGCCCCCCUUCUUUACAUUAGUUCGUCGGUUGAUCUC
Get precursor sequence
Structure
        10          20        30         40        50          
GCUUUCCCUAAAGAUCU--    UU      AA    -|     U      UG  UGGAAAA 
                   GUGU  AGAAGG  GGCA GUGUAA GUUAGC  GU       \
                   UACA  UCUUCC  CCGU CACAUU CAAUUG  CA       U
CUCUAGUUGGCUGCUUGAU    UU      CC    C^     -      GU  CAGACGA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-34-P3c_5p
mirBase accessionMIMAT0003704
Sequence 
0- AGGCAGUGUAAUGUUAGCUGGU -22
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Proposed targets TargetScanVert: xtr-miR-449a-5p
Star sequence

Xtr-Mir-34-P3c_3p* (predicted)
mirBase accessionMIMAT0022716
Sequence 
39- UGGUUAACUUACACCUGCCCCC -61
Get sequence
Proposed targets TargetScanVert: xtr-miR-449a-3p