Mir-34-P3c

MirGeneDB ID

Loc-Mir-34-P3c

Family name

MIR-34 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P1 Loc-Mir-34-P2a Loc-Mir-34-P2b Loc-Mir-34-P3a Loc-Mir-34-P3b Loc-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG2: 5772554-5772612 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3a LG2: 5771825-5771881 [+] Ensembl
Mir-34-P3b LG2: 5772422-5772481 [+] Ensembl
Mir-34-P3c LG2: 5772554-5772612 [+] Ensembl
Mir-34-P3d LG2: 5773026-5773084 [+] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAAUCUUACCAGUGAUCGUGAGUGGCUGGGAGGCAGUGAAAUGUUAGCUGGUUUAAUUGAUUUCACCAGCUUACUUUUUUACUGCCCUCUUGCUGCCCAUACUCCAACCAUUGUGGUUU

Get precursor sequence

Structure

        10          20        30        40         50        
AAAUCUUACCAGUGAUC--   A UG  U  GA          U-| U       UUAAU 
                   GUG G  GC GG  GGCAGUGAAA  GU AGCUGGU     U
                   UAC C  CG UC  CCGUCAUUUU  CA UCGACCA     G
UUUGGUGUUACCAACCUCA   C GU  U  UC          UU^ U       CUUUA 
       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P3c_5p

mirBase accession

None

Sequence

0- AGGCAGUGAAAUGUUAGCUGGU -22

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Star sequence

Loc-Mir-34-P3c_3p*

mirBase accession

None

Sequence

36- CAGCUUACUUUUUUACUGCCCUC -59

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