MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-34-P3c

Family name MIR-34 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-34-P1  Loc-Mir-34-P2a  Loc-Mir-34-P2b  Loc-Mir-34-P3a  Loc-Mir-34-P3b  Loc-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cin-Mir-34  Cja-Mir-34-P3c  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3c  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3c  Isc-Mir-34  Laf-Mir-34-P3c  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mgi-Mir-34  Mml-Mir-34-P3c  Mmr-Mir-34-P3c  Mmu-Mir-34-P3c  Mom-Mir-34  Neu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3c  Pau-Mir-34  Pbv-Mir-34-P3c  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3c  Rph-Mir-34  Sha-Mir-34-P3c  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG2: 5772554-5772612 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3c)		 Mir-34-P3a LG2: 5771825-5771881 [+] Ensembl
Mir-34-P3b LG2: 5772422-5772481 [+] Ensembl
Mir-34-P3c LG2: 5772554-5772612 [+] Ensembl
Mir-34-P3d LG2: 5773026-5773084 [+] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
AAAUCUUACCAGUGAUCGUGAGUGGCUGGGAGGCAGUGAAAUGUUAGCUGGUUUAAUUGAUUUCACCAGCUUACUUUUUUACUGCCCUCUUGCUGCCCAUACUCCAACCAUUGUGGUUU
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Structure
        10          20        30        40         50        
AAAUCUUACCAGUGAUC--   A UG  U  GA          U-| U       UUAAU 
                   GUG G  GC GG  GGCAGUGAAA  GU AGCUGGU     U
                   UAC C  CG UC  CCGUCAUUUU  CA UCGACCA     G
UUUGGUGUUACCAACCUCA   C GU  U  UC          UU^ U       CUUUA 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-34-P3c_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGAAAUGUUAGCUGGU -22
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Star sequence

Loc-Mir-34-P3c_3p*
mirBase accessionNone
Sequence 
36- CAGCUUACUUUUUUACUGCCCUC -59
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