Mir-34-P1

MirGeneDB ID

Loc-Mir-34-P1

Family name

MIR-34 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P2a Loc-Mir-34-P2b Loc-Mir-34-P3a Loc-Mir-34-P3b Loc-Mir-34-P3c Loc-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P1 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P1 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P1 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cin-Mir-34 Cja-Mir-34-P1 Cli-Mir-34-P1 Cmi-Mir-34-P1 Cpi-Mir-34-P1 Cpo-Mir-34-P1 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dpu-Mir-34 Dre-Mir-34-P1 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Eca-Mir-34-P1 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Gga-Mir-34-P1 Gja-Mir-34-P1 Gmo-Mir-34-P1 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P1 Isc-Mir-34 Laf-Mir-34-P1 Lch-Mir-34-P1 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mal-Mir-34-P1 Mdo-Mir-34-P1 Mgi-Mir-34 Mml-Mir-34-P1 Mmr-Mir-34-P1 Mmu-Mir-34-P1 Mom-Mir-34 Mun-Mir-34-P1 Neu-Mir-34-P1 Npo-Mir-34 Oan-Mir-34-P1 Obi-Mir-34 Ocu-Mir-34-P1 Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P1 Pau-Mir-34 Pbv-Mir-34-P1 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P1 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P1 Rph-Mir-34 Sha-Mir-34-P1 Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P1 Spu-Mir-34 Sto-Mir-34-P1 Tca-Mir-34 Tgu-Mir-34-P1 Tni-Mir-34-P1 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P1a Xla-Mir-34-P1b Xtr-Mir-34-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG25: 12872249-12872313 [+] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAGGGCCCUGGGCAUUUGUGGGCGCUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAGGAGUCUGAACGAAGCAAUCAGCAAGUAUACUGCCGCAGAAACGCCUCACCAUGCGUGCCACACAAGG

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Structure

        10         20         30         40        50        60  
AAGGGCCCUGGGCAUUU-   -    C    U         -|  A          GUGAGGAG 
                  GUG GGCG UUCU UGGCAGUGU CUU GCUGGUUGUU        \
                  CAC CCGC AAGA GCCGUCAUA GAA CGACUAACGA        U
GGAACACACCGUGCGUAC   U    A    C         U^  -          AGCAAGUC 
   120       110       100        90         80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P1_5p

mirBase accession

None

Sequence

0- UGGCAGUGUCUUAGCUGGUUGUU -23

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Star sequence

Loc-Mir-34-P1_3p*

mirBase accession

None

Sequence

42- CAAUCAGCAAGUAUACUGCCGCA -65

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