Mir-34-P1

MirGeneDB ID

Gmo-Mir-34-P1

Family name

MIR-34 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-34

Paralogues

Gmo-Mir-34-P3c Gmo-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P1 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P1 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P1 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cin-Mir-34 Cja-Mir-34-P1 Cli-Mir-34-P1 Cmi-Mir-34-P1 Cpi-Mir-34-P1 Cpo-Mir-34-P1 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dpu-Mir-34 Dre-Mir-34-P1 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Eca-Mir-34-P1 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Gga-Mir-34-P1 Gja-Mir-34-P1 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P1 Isc-Mir-34 Laf-Mir-34-P1 Lch-Mir-34-P1 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P1 Mal-Mir-34-P1 Mdo-Mir-34-P1 Mgi-Mir-34 Mml-Mir-34-P1 Mmr-Mir-34-P1 Mmu-Mir-34-P1 Mom-Mir-34 Mun-Mir-34-P1 Neu-Mir-34-P1 Npo-Mir-34 Oan-Mir-34-P1 Obi-Mir-34 Ocu-Mir-34-P1 Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P1 Pau-Mir-34 Pbv-Mir-34-P1 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P1 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P1 Rph-Mir-34 Sha-Mir-34-P1 Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P1 Spu-Mir-34 Sto-Mir-34-P1 Tca-Mir-34 Tgu-Mir-34-P1 Tni-Mir-34-P1 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P1a Xla-Mir-34-P1b Xtr-Mir-34-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4582: 174802-174866 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

UGCUAGACUUGCCUACUGUGGGUGUUUCUCUGGCAGUGUCUUAGCUGGUUGUUGUGAGGAGUGAGAACGAAGCAAUCAGCAAGUAUACUGCCGCAGAAACUCUCGCGAUAUAUGGGCCCUGGAAC

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Structure

        10          20        30         40        50        60  
UGCUAGACUUGCCUACU--     U      C         -|  A         UGUGAGGAG 
                   GUGGG GUUUCU UGGCAGUGU CUU GCUGGUUGU         \
                   CGCUC CAAAGA GCCGUCAUA GAA CGACUAACG         U
CAAGGUCCCGGGUAUAUAG     U      C         U^  -         AAGCAAGAG 
   120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-34-P1_5p

mirBase accession

MIMAT0044295

Sequence

0- UGGCAGUGUCUUAGCUGGUUGU -22

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Star sequence

Gmo-Mir-34-P1_3p*

mirBase accession

MIMAT0044296

Sequence

43- AAUCAGCAAGUAUACUGCCGCA -65

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