MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-34-P1

Family name MIR-34 (all species)
Seed GGCAGUG
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-34-P2a  Ebu-Mir-34-P2b 
Orthologues Aae-Mir-34  Aca-Mir-34-P1  Ami-Mir-34-P1  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P1  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P1  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P1  Cmi-Mir-34-P1  Cpi-Mir-34-P1  Cpo-Mir-34-P1  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P1  Dpu-Mir-34  Dre-Mir-34-P1  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P1  Gga-Mir-34-P1  Gja-Mir-34-P1  Gmo-Mir-34-P1  Hsa-Mir-34-P1  Isc-Mir-34  Lch-Mir-34-P1  Lgi-Mir-34  Loc-Mir-34-P1  Mal-Mir-34-P1  Mdo-Mir-34-P1  Mml-Mir-34-P1  Mmu-Mir-34-P1  Mun-Mir-34-P1  Npo-Mir-34  Oan-Mir-34-P1  Obi-Mir-34  Ocu-Mir-34-P1  Ovu-Mir-34  Pbv-Mir-34-P1  Pfl-Mir-34  Pma-Mir-34-P1  Pmi-Mir-34  Rno-Mir-34-P1  Sha-Mir-34-P1  Sko-Mir-34  Spt-Mir-34-P1  Spu-Mir-34  Sto-Mir-34-P1  Tca-Mir-34  Tgu-Mir-34-P1  Tni-Mir-34-P1  Xbo-Mir-34  Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xtr-Mir-34-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)
FYBX02010669.1: 550923-550980 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUGGGUGGGCUGGCUGUGGGUGCUCCACUGGCAGUGUUUCAGCUGGUUGUUUUGAUGACAUUGACAACUAGCAAGACUCUGCCCCUGGAUUGCUCCACCAUCACUGCUAACAUUUU
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Structure
        10         20         30        40        50         
UGGUGGGUGGGCUGGCU-    -| GC    CU     U    CA          UUGAU 
                  GUGG GU  UCCA  GGCAG GUUU  GCUGGUUGUU     \
                  CACC CG  AGGU  CCGUC CAGA  CGAUCAACAG     G
UUUUACAAUCGUCACUAC    U^ UU    CC     U    A-          UUACA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ebu-Mir-34-P1_5p

mirBase accessionNone
Sequence
0- UGGCAGUGUUUCAGCUGGUUGUU -23
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Star sequence

Ebu-Mir-34-P1_3p* (predicted)

mirBase accessionNone
Sequence
36- CAACUAGCAAGACUCUGCCCCU -58
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