MirGeneDB ID | Bta-Mir-34-P1 |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-34a
|
Paralogues |
Bta-Mir-34-P2a
Bta-Mir-34-P2b
Bta-Mir-34-P3a
Bta-Mir-34-P3b
Bta-Mir-34-P3c
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P1
Ami-Mir-34-P1
Asu-Mir-34
Bge-Mir-34
Cbr-Mir-34
Cel-Mir-34
Cfa-Mir-34-P1
Cgi-Mir-34
Cin-Mir-34
Cli-Mir-34-P1
Cmi-Mir-34-P1
Cpi-Mir-34-P1
Cpo-Mir-34-P1
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dno-Mir-34-P1
Dpu-Mir-34
Dre-Mir-34-P1
Dsi-Mir-34
Dya-Mir-34
Ebu-Mir-34-P1
Efe-Mir-34
Esc-Mir-34
Ete-Mir-34-P1
Gga-Mir-34-P1
Gja-Mir-34-P1
Gmo-Mir-34-P1
Hsa-Mir-34-P1
Isc-Mir-34
Lch-Mir-34-P1
Lgi-Mir-34
Loc-Mir-34-P1
Mal-Mir-34-P1
Mdo-Mir-34-P1
Mml-Mir-34-P1
Mmu-Mir-34-P1
Mun-Mir-34-P1
Npo-Mir-34
Oan-Mir-34-P1
Obi-Mir-34
Ocu-Mir-34-P1
Ovu-Mir-34
Pbv-Mir-34-P1
Pfl-Mir-34
Pma-Mir-34-P1
Pmi-Mir-34
Rno-Mir-34-P1
Sha-Mir-34-P1
Sko-Mir-34
Spt-Mir-34-P1
Spu-Mir-34
Sto-Mir-34-P1
Tca-Mir-34
Tgu-Mir-34-P1
Tni-Mir-34-P1
Xbo-Mir-34
Xla-Mir-34-P1a
Xla-Mir-34-P1b
Xtr-Mir-34-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
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Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037343.1: 44308946-44309011 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUCGGCGGGGCCAGCUGUGAGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAGUAAUAAUGCAGGAAGCAAUCAGCAAGUAUACUGCCCUAGAAGUGCUGCACGUUGUGGGCCCAGGAGGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAUCGGCGGGGCCAGCU- - UG UU -| A GUGAGUAA
GUG AG UUUCU GGCAGUGU CUU GCUGGUUGUU U
CAC UC GAAGA CCGUCAUA GAA CGACUAACGA A
GGGAGGACCCGGGUGUUG G GU UC U^ - AGGACGUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
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Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Mir-34-P1_5p |
mirBase accession | MIMAT0004340 |
Sequence |
0- UGGCAGUGUCUUAGCUGGUUGUU -23
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-34a
|
Star sequence |
Bta-Mir-34-P1_3p* |
mirBase accession | None |
Sequence |
43- CAAUCAGCAAGUAUACUGCCCUA -66
Get sequence
|