Mir-34-P3b

MirGeneDB ID

Bta-Mir-34-P3b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-449b

Paralogues

Bta-Mir-34-P1 Bta-Mir-34-P2a Bta-Mir-34-P2b Bta-Mir-34-P3a Bta-Mir-34-P3c

Orthologues

Aae-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Hsa-Mir-34-P3b Isc-Mir-34 Lch-Mir-34-P3b Lgi-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mml-Mir-34-P3b Mmu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ovu-Mir-34 Pbv-Mir-34-P3b Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Rno-Mir-34-P3b Sha-Mir-34-P3b Sko-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Xbo-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037347.1: 23943207-23943267 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3a NC_037347.1: 23941721-23941783 [+] UCSC Ensembl
Mir-34-P3b NC_037347.1: 23943207-23943267 [+] UCSC Ensembl
Mir-34-P3c NC_037347.1: 23943328-23943389 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUGAUGAGCAGCAGUGACCUGAAUCAGGUAGGCAGUGUAUUGUUAGCUGGCUGCUUUGGGUCAAUUCAGCAGCCACAACUGCCCUGCCACUUGCUUCUGGAUAAAUUCUUCUUGUUAACG

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Structure

        10          20        30        40         50        60 
CAUGAUGAGCAGCAGUGA--| U   U     A     U   -    UA    G  GCUUUGG 
                    CC GAA CAGGU GGCAG GUA UUGU  GCUG CU       \
                    GG CUU GUUCA CCGUC CGU AACA  CGAC GA       G
GCAAUUGUUCUUCUUAAAUA^ U   C     -     C   C    C-    -  CUUAACU 
 .       110       100        90         80          70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-34-P3b_5p

mirBase accession

MIMAT0009321

Sequence

0- AGGCAGUGUAUUGUUAGCUGGCU -23

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Proposed targets

TargetScanVert: bta-miR-449b

Star sequence

Bta-Mir-34-P3b_3p* (predicted)

mirBase accession

None

Sequence

40- CAGCCACAACUGCCCUGCCAC -61

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