Mir-34-P3b

MirGeneDB ID

Cmi-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-34-P1 Cmi-Mir-34-P2a Cmi-Mir-34-P2b Cmi-Mir-34-P3a Cmi-Mir-34-P3c Cmi-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635876.1: 5894621-5894682 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-4541 KI635876.1: 5850052-5850115 [+] UCSC Ensembl
Mir-34-P3a KI635876.1: 5893708-5893771 [+] UCSC Ensembl
Mir-34-P3b KI635876.1: 5894621-5894682 [+] UCSC Ensembl
Mir-34-P3c KI635876.1: 5894760-5894821 [+] UCSC Ensembl
Mir-34-P3d KI635876.1: 5895211-5895269 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AACGUUCACAAUGAAGUGCCAGAGUCUGGAAGGCAGUGUACAGUUAGCUGGCUGCUUGGUGUUUGGACAGCAGCCGCUACGUAUUCCGCCACUUGCCUCGUGGUCUGUCACGUCAGAUGAUC

Get precursor sequence

Structure

        10         20         30        40        50        60  
AACGUUCACAAUGAAGU-    -|  UCU  AA   AGU    A  U   U       UGGUG 
                  GCCA GAG   GG  GGC   GUAC GU AGC GGCUGCU     U
                  UGGU CUC   UC  CCG   UAUG CA UCG CCGACGA     U
CUAGUAGACUGCACUGUC    G^  CGU  A-   CCU    -  -   -       CAGGU 
120       110       100         90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-34-P3b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUACAGUUAGCUGGCUGCU -26

Get sequence

Star sequence

Cmi-Mir-34-P3b_3p*

mirBase accession

None

Sequence

40- CAGCCGCUACGUAUUCCGCCAC -62

Get sequence