Mir-34-P3b

MirGeneDB ID

Ocu-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-449b

Paralogues

Ocu-Mir-34-P1 Ocu-Mir-34-P2a Ocu-Mir-34-P2b Ocu-Mir-34-P3a Ocu-Mir-34-P3c

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

chr11: 71142387-71142447 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3c chr11: 71142265-71142326 [-] UCSC Ensembl
Mir-34-P3b chr11: 71142387-71142447 [-] UCSC Ensembl
Mir-34-P3a chr11: 71143078-71143138 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GGUGCAGCGGGGCAAUGACCUGAAGCAGGUAGGCAGUGUAAUGUUAGUUGGCUGCUUUGGGUCAAGUCAGCAGCCACAGGUACGCUGCCACUUGCCUCUGGCUAAAUUGCUCUUGCUCAUG

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Structure

        10          20        30        40         50        60  
GGUGCAGCGGGGCAAUGA--| U  A      A         A-   UAGUU       UUGGG 
                    CC GA GCAGGU GGCAGUGUA  UGU     GGCUGCU     U
                    GG CU CGUUCA CCGUCGCAU  ACA     CCGACGA     C
GUACUCGUUCUCGUUAAAUC^ U  C      -         GG   -----       CUGAA 
 .       110       100        90         80             70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-34-P3b_5p

mirBase accession

MIMAT0048455

Sequence

0- AGGCAGUGUAAUGUUAGUUGGCUGCU -26

Get sequence

Star sequence

Ocu-Mir-34-P3b_3p* (predicted)

mirBase accession

MIMAT0048456

Sequence

40- CAGCCACAGGUACGCUGCCAC -61

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