Mir-34-P3b

MirGeneDB ID

Gja-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-34-P1 Gja-Mir-34-P2a Gja-Mir-34-P2b Gja-Mir-34-P3a Gja-Mir-34-P3c Gja-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015173699.1: 555240-555301 [+]

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3a NW_015173699.1: 554751-554807 [+]
Mir-34-P3b NW_015173699.1: 555240-555301 [+]
Mir-34-P3c NW_015173699.1: 555373-555434 [+]
Mir-34-P3d NW_015173699.1: 557874-557932 [+]

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GAUUUCAUACUUUUGCUGCCUGUGUCUGGUAGGCAGUGUAGAAUUAGCUGGCUGCUUUGCUUUGACUGCAGCAGUCACUACUACACUGUUACUCGCCGCAGGAGUGGUUCAUCGUCUGAACA

Get precursor sequence

Structure

        10          20        30        40        50        60   
GAUUUCAUACUUUUGCUG--|     UCU     G        AAU   C        UUGCUU 
                    CCUGUG   GGUAG CAGUGUAG   UAG UGGCUGCU      \
                    GGACGC   UCAUU GUCACAUC   AUC ACUGACGA      U
ACAAGUCUGCUACUUGGUGA^     CGC     -        ---   -        CGUCAG 
120       110       100        90            80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-34-P3b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGAAUUAGCUGGCUGCU -26

Get sequence

Star sequence

Gja-Mir-34-P3b_3p* (predicted)

mirBase accession

None

Sequence

41- CAGUCACUACUACACUGUUAC -62

Get sequence