Mir-34-P3b

MirGeneDB ID

Loc-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P1 Loc-Mir-34-P2a Loc-Mir-34-P2b Loc-Mir-34-P3a Loc-Mir-34-P3c Loc-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG2: 5772422-5772481 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3a LG2: 5771825-5771881 [+] Ensembl
Mir-34-P3b LG2: 5772422-5772481 [+] Ensembl
Mir-34-P3c LG2: 5772554-5772612 [+] Ensembl
Mir-34-P3d LG2: 5773026-5773084 [+] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AUCCUUCUGAAGACCUGUGUGCAGGUCAGAAGGCAGUGUAGCGUUAGCUGGUUGUAAACCUGUUACCAGCUCACAAUUCAACUGCUGUCUCACCGCGCAUUUGGAAGCAGCCAGUUCAAC

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Structure

        10            20        30        40         50        
AUCCUUCUGAAGACCUG----|    A   C   A      GUAGC-  U       UGUAA 
                     UGUGC GGU AGA GGCAGU      GU AGCUGGU     A
                     ACGCG CCA UCU UCGUCA      CA UCGACCA     C
CAACUUGACCGACGAAGGUUU^    -   C   G      ACUUAA  C       UUGUC 
.       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P3b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGCGUUAGCUGGU -22

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Star sequence

Loc-Mir-34-P3b_3p*

mirBase accession

None

Sequence

36- CAGCUCACAAUUCAACUGCUGUCU -60

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