Mir-34-P2b

MirGeneDB ID

Loc-Mir-34-P2b

Family name

MIR-34 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P1 Loc-Mir-34-P2a Loc-Mir-34-P3a Loc-Mir-34-P3b Loc-Mir-34-P3c Loc-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cin-Mir-34 Cja-Mir-34-P2b Cli-Mir-34-P2b Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Eca-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2b Isc-Mir-34 Laf-Mir-34-P2b Lch-Mir-34-P2b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mdo-Mir-34-P2b Mgi-Mir-34 Mml-Mir-34-P2b Mmr-Mir-34-P2b Mmu-Mir-34-P2b Mom-Mir-34 Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2b Pau-Mir-34 Pbv-Mir-34-P2b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2b Rph-Mir-34 Sha-Mir-34-P2b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG26: 395123-395177 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2a LG26: 394489-394545 [+] Ensembl
Mir-34-P2b LG26: 395123-395177 [+] Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

UCCUCUUCCUCUCUGCUCUGUCUGGUUGCCAGGCAGUGUAGUUAGCUGAUUGUGCGAGUGGGUAAUCACUAACCACACAGCCAGGUGAACUGACAGGAGAUGCAGCCCGUGGGAA

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Structure

        10          20        30        40        50       
UCCUCUUCCUCUCUGCU--|    UGG UG  A   A    A     C      UGCG 
                   CUGUC   U  CC GGC GUGU GUUAG UGAUUG    A
                   GACAG   A  GG CCG CACA CAAUC ACUAAU    G
AAGGGUGCCCGACGUAGAG^    UCA GU  A   A    C     -      GGGU 
   110       100        90        80        70         60

Deep sequencing

Go to detailed chart

Comment

This is possibly a Group 2 miRNA.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P2b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

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Star sequence

Loc-Mir-34-P2b_3p*

mirBase accession

None

Sequence

33- AAUCACUAACCACACAGCCAGG -55

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