MirGeneDB 2.1
MirGeneDB ID

Mdo-Mir-34-P2b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-34c
Paralogues Mdo-Mir-34-P1  Mdo-Mir-34-P2a  Mdo-Mir-34-P3b  Mdo-Mir-34-P3c  Mdo-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2b  Ami-Mir-34-P2b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2b  Cmi-Mir-34-P2b  Cpi-Mir-34-P2b  Cpo-Mir-34-P2b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2b  Dpu-Mir-34  Dre-Mir-34-P2b  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2b  Gga-Mir-34-P2b  Gja-Mir-34-P2b  Hsa-Mir-34-P2b  Isc-Mir-34  Lch-Mir-34-P2b  Lgi-Mir-34  Loc-Mir-34-P2b  Mml-Mir-34-P2b  Mmu-Mir-34-P2b  Mun-Mir-34-P2b  Npo-Mir-34  Oan-Mir-34-P2b  Obi-Mir-34  Ocu-Mir-34-P2b  Ovu-Mir-34  Pbv-Mir-34-P2b  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2b  Sha-Mir-34-P2b  Sko-Mir-34  Spt-Mir-34-P2b  Spu-Mir-34  Sto-Mir-34-P2b  Tca-Mir-34  Tgu-Mir-34-P2b  Xbo-Mir-34  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(monDom5_add)		 4: 241888509-241888566 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2b)		 Mir-34-P2b 4: 241888509-241888566 [-] UCSC Ensembl
Mir-34-P2a 4: 241889198-241889256 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGGGGGGGGGAAAUUGAGUCUAGUUACUAGGCAGUGUAGUUAGCUGAUUGCUAGCAGUAGUACCAAUCACUAACCACACAGCCAAGUAAACAGAUUUGUAAUUCAUCCAACCAGGU
Get precursor sequence
Structure
        10          20        30        40        50         
AUUGGGGGGGGGAAAUU--|     AG     A   A    A     C      CUAGCA 
                   GAGUCU  UUACU GGC GUGU GUUAG UGAUUG      \
                   UUUAGA  AAUGA CCG CACA CAAUC ACUAAC      G
UGGACCAACCUACUUAAUG^     CA     A   A    C     -      CAUGAU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-34-P2b_5p
mirBase accessionMIMAT0028586
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGC -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-34c-5p
Star sequence

Mdo-Mir-34-P2b_3p*
mirBase accessionMIMAT0028587
Sequence 
36- AAUCACUAACCACACAGCCAAG -58
Get sequence
Proposed targets TargetScanVert: mdo-miR-34c-3p