Mir-34-P2b

MirGeneDB ID

Ami-Mir-34-P2b

Family name

MIR-34 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-34c

Paralogues

Ami-Mir-34-P1 Ami-Mir-34-P2a Ami-Mir-34-P3a Ami-Mir-34-P3b Ami-Mir-34-P3c Ami-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cin-Mir-34 Cja-Mir-34-P2b Cli-Mir-34-P2b Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Eca-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2b Isc-Mir-34 Laf-Mir-34-P2b Lch-Mir-34-P2b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mgi-Mir-34 Mml-Mir-34-P2b Mmr-Mir-34-P2b Mmu-Mir-34-P2b Mom-Mir-34 Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2b Pau-Mir-34 Pbv-Mir-34-P2b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2b Rph-Mir-34 Sha-Mir-34-P2b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017710534.1: 1301780-1301834 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2b NW_017710534.1: 1301780-1301834 [-] UCSC
Mir-34-P2a NW_017710534.1: 1302497-1302555 [-] UCSC

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AGAGCUAUCUUGUACCUCAGCCUAGUUGCUAGGCAGUGUAGUUAGCUGAUUGCAAAAGGCAACAAUCACUAACCACACAGCCAGGUAAAAAGGUCUGUCUUGCACCUAGCUAGCU

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Structure

        10         20         30        40        50       
AGAGCUAUCUUGUACCU-   -|  AG     A   A    A     C      CAAA 
                  CAG CCU  UUGCU GGC GUGU GUUAG UGAUUG    A
                  GUC GGA  AAUGG CCG CACA CAAUC ACUAAC    G
UCGAUCGAUCCACGUUCU   U^  AA     A   A    C     -      AACG 
   110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-34-P2b_5p

mirBase accession

MIMAT0038099

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGC -23

Get sequence

Star sequence

Ami-Mir-34-P2b_3p*

mirBase accession

MIMAT0038100

Sequence

33- AAUCACUAACCACACAGCCAGG -55

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