MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-34-P2b

Family name MIR-34 (all species)
Seed GGCAGUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-34c
Paralogues Ami-Mir-34-P1  Ami-Mir-34-P2a  Ami-Mir-34-P3a  Ami-Mir-34-P3b  Ami-Mir-34-P3c  Ami-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2b  Cmi-Mir-34-P2b  Cpi-Mir-34-P2b  Cpo-Mir-34-P2b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2b  Dpu-Mir-34  Dre-Mir-34-P2b  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2b  Gga-Mir-34-P2b  Gja-Mir-34-P2b  Hsa-Mir-34-P2b  Isc-Mir-34  Lch-Mir-34-P2b  Lgi-Mir-34  Loc-Mir-34-P2b  Mdo-Mir-34-P2b  Mml-Mir-34-P2b  Mmu-Mir-34-P2b  Mun-Mir-34-P2b  Npo-Mir-34  Oan-Mir-34-P2b  Obi-Mir-34  Ocu-Mir-34-P2b  Ovu-Mir-34  Pbv-Mir-34-P2b  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2b  Sha-Mir-34-P2b  Sko-Mir-34  Spt-Mir-34-P2b  Spu-Mir-34  Sto-Mir-34-P2b  Tca-Mir-34  Tgu-Mir-34-P2b  Xbo-Mir-34  Xla-Mir-34-P2b1a  Xla-Mir-34-P2b1b  Xla-Mir-34-P2b2a  Xla-Mir-34-P2b2b  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017710534.1: 1301780-1301834 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-34-P2b)		 Mir-34-P2b NW_017710534.1: 1301780-1301834 [-] UCSC
Mir-34-P2a NW_017710534.1: 1302497-1302555 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGAGCUAUCUUGUACCUCAGCCUAGUUGCUAGGCAGUGUAGUUAGCUGAUUGCAAAAGGCAACAAUCACUAACCACACAGCCAGGUAAAAAGGUCUGUCUUGCACCUAGCUAGCU
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Structure
        10         20         30        40        50       
AGAGCUAUCUUGUACCU-   -|  AG     A   A    A     C      CAAA 
                  CAG CCU  UUGCU GGC GUGU GUUAG UGAUUG    A
                  GUC GGA  AAUGG CCG CACA CAAUC ACUAAC    G
UCGAUCGAUCCACGUUCU   U^  AA     A   A    C     -      AACG 
   110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-34-P2b_5p
mirBase accessionMIMAT0038099
Sequence 
0- AGGCAGUGUAGUUAGCUGAUUGC -23
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Star sequence

Ami-Mir-34-P2b_3p*
mirBase accessionMIMAT0038100
Sequence 
33- AAUCACUAACCACACAGCCAGG -55
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