Mir-34-P3c

MirGeneDB ID

Ami-Mir-34-P3c

Family name

MIR-34 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-449a

Paralogues

Ami-Mir-34-P1 Ami-Mir-34-P2a Ami-Mir-34-P2b Ami-Mir-34-P3a Ami-Mir-34-P3b Ami-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017712138.1: 29165345-29165403 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3d NW_017712138.1: 29164110-29164168 [-] UCSC
Mir-34-P3c NW_017712138.1: 29165345-29165403 [-] UCSC
Mir-34-P3b NW_017712138.1: 29165493-29165553 [-] UCSC
Mir-34-P3a NW_017712138.1: 29165972-29166036 [-] UCSC

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GACCAGUUUUGAAAACAGUGUGUGAUGGGAAGGCAGUGUACUGUUAGCUGGUGUCAGUUUUUUCAACCAGCUAACAUGCAGCUGCUAUCCUACUGCACAAACUUUGAUCACUGAAGUGC

Get precursor sequence

Structure

        10          20        30         40        50         
GACCAGUUUUGAAAACAG--     GA     A     -|   C           GUCAGU 
                    UGUGU  UGGGA GGCAG UGUA UGUUAGCUGGU      \
                    ACACG  AUCCU UCGUC ACGU ACAAUCGACCA      U
CGUGAAGUCACUAGUUUCAA     UC     A     G^   -           ACUUUU 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Ami-Mir-34-P3c_5p

mirBase accession

MIMAT0038281

Sequence

0- AGGCAGUGUACUGUUAGCUGGU -22

Get sequence

Star sequence

Ami-Mir-34-P3c_3p* (predicted)

mirBase accession

None

Sequence

37- CAGCUAACAUGCAGCUGCUAUC -59

Get sequence