MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-34-P3c

Family name MIR-34 (all species)
Seed GGCAGUG
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-449a
Paralogues Oan-Mir-34-P1  Oan-Mir-34-P2a  Oan-Mir-34-P2b  Oan-Mir-34-P3a  Oan-Mir-34-P3b 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Hsa-Mir-34-P3c  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mml-Mir-34-P3c  Mmu-Mir-34-P3c  Npo-Mir-34  Obi-Mir-34  Ocu-Mir-34-P3c  Ovu-Mir-34  Pbv-Mir-34-P3c  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3c  Sha-Mir-34-P3c  Sko-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Xbo-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041728.1: 7246045-7246105 [-]
Clustered miRNAs
(< 50kb from Mir-34-P3c)
Mir-34-P3c NC_041728.1: 7246045-7246105 [-]
Mir-34-P3b NC_041728.1: 7246184-7246244 [-]
Mir-34-P3a NC_041728.1: 7247559-7247619 [-]
Precursor
(pre-Mir +30nt flank)
CCUUUGAAGUGGCAUCCGUGUGCGAUAGUUUGGCAGUGUUUGUUAGCUGGUUGAAUAUUUAAAUGGCACCAGCUGACAGACAGCUGCUUUCCUAUUGCAUGUACCACGAGCAUCGAACGAG
Get precursor sequence
Structure
        10          20        30         40        50         
CCUUUGAAGUGGCAUCC-- UG        UUU     -|              UGAAUAU 
                   G  UGCGAUAG   GGCAG UGUUUGUUAGCUGGU       U
                   U  ACGUUAUC   UCGUC ACAGACAGUCGACCA       U
GAGCAAGCUACGAGCACCA GU        CUU     G^              CGGUAAA 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-34-P3c_5p

mirBase accessionMIMAT0007015
Sequence
0- UGGCAGUGUUUGUUAGCUGGU -21
Get sequence
Star sequence

Oan-Mir-34-P3c_3p* (predicted)

mirBase accessionNone
Sequence
39- CAGCUGACAGACAGCUGCUUUC -61
Get sequence