MirGeneDB ID | Spt-Mir-34-P3c |
---|---|
Family name | MIR-34 (all species) |
Seed | GGCAGUG |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-34-P1 Spt-Mir-34-P2a Spt-Mir-34-P2b Spt-Mir-34-P3b Spt-Mir-34-P3d |
Orthologues | Aae-Mir-34 Aca-Mir-34-P3c Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Hsa-Mir-34-P3c Isc-Mir-34 Lgi-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mml-Mir-34-P3c Mmu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ovu-Mir-34 Pbv-Mir-34-P3c Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Rno-Mir-34-P3c Sha-Mir-34-P3c Sko-Mir-34 Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Xbo-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012145.1: 2531952-2532013 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGCAUGGUUUGUUAGGUGUGUGUGACGGGAUGGCAGUGUAUCGUUAGCUGGUUGUAAAGCUUAAGGACACCAGCUAACAUGCAGCUGCUCUCCUGUUGCACAUGCUUUAUUCAUCAAACUGGGet precursor sequence |
Structure | 10 20 30 40 50 60 AGCAUGGUUUGUUAGGU-- UG U -| C UGUAAAG GUGUG ACGGGA GGCAG UGUAU GUUAGCUGGU C UACAC UGUCCU UCGUC ACGUA CAAUCGACCA U GGUCAAACUACUUAUUUCG GU C G^ - CAGGAAU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), UGUG in loop |
Mature sequence | Spt-Mir-34-P3c_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGCAGUGUAUCGUUAGCUGGU -22
Get sequence
|
Star sequence | Spt-Mir-34-P3c_3p* (predicted) |
mirBase accession | None |
Sequence |
40- CAGCUAACAUGCAGCUGCUCUC -62
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|