Mir-34-P3c

MirGeneDB ID

Bta-Mir-34-P3c

Family name

MIR-34 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-449a

Paralogues

Bta-Mir-34-P1 Bta-Mir-34-P2a Bta-Mir-34-P2b Bta-Mir-34-P3a Bta-Mir-34-P3b

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037347.1: 23943328-23943389 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3a NC_037347.1: 23941721-23941783 [+] UCSC Ensembl
Mir-34-P3b NC_037347.1: 23943207-23943267 [+] UCSC Ensembl
Mir-34-P3c NC_037347.1: 23943328-23943389 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAGUACACCGGUGACCUAUGUGUGAUGGGUUGGCAGUGUAUUGUUAGCUGGUUGAAUAUGUGAGUGCCAUCAGCUAACAUGCAACUGCUAUCUUAUUGCAUGUAUAAUGAGCAUCAGUAAUG

Get precursor sequence

Structure

        10          20        30         40        50        60
AAGUACACCGGUGACCU--     UG     U      -|    U          UGAAUAU 
                   AUGUG  AUGGG UGGCAG UGUAU GUUAGCUGGU       G
                   UGUAC  UAUUC AUCGUC ACGUA CAAUCGACUA       U
GUAAUGACUACGAGUAAUA     GU     U      A^    -          CCGUGAG 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-34-P3c_5p

mirBase accession

MIMAT0009320

Sequence

0- UGGCAGUGUAUUGUUAGCUGGU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-449a

Star sequence

Bta-Mir-34-P3c_3p* (predicted)

mirBase accession

None

Sequence

40- CAGCUAACAUGCAACUGCUAUC -62

Get sequence