MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-34-P3c

Family name MIR-34 (all species)
Seed GGCAGUG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-34-P1 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Hsa-Mir-34-P3c  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mml-Mir-34-P3c  Mmu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ovu-Mir-34  Pbv-Mir-34-P3c  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3c  Sha-Mir-34-P3c  Sko-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Xbo-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
12: 5648628-5648686 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUGAGCGUCCGACCGCGGGCGGCUGGUAGGCAGUGUCAUGUUAGCUGGUUGGUUCCGUUAGCACCAGUUUACCUGCCACUGCUCUCCAACCACCUGCAAACACCCCCGAAAGUUAC
Get precursor sequence
Structure
        10          20        30        40        50         
AAGCUGAGCGUCCGACC--|    C  C   UA       U  U  U       UGGUUC 
                   GCGGG GG UGG  GGCAGUG CA GU AGCUGGU      \
                   CGUCC CC ACC  UCGUCAC GU CA UUGACCA      C
CAUUGAAAGCCCCCACAAA^    A  A   UC       C  C  U       CGAUUG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-34-P3c_5p

mirBase accessionNone
Sequence
0- AGGCAGUGUCAUGUUAGCUGGU -22
Get sequence
Star sequence

Tni-Mir-34-P3c_3p* (predicted)

mirBase accessionNone
Sequence
37- CAGUUUACCUGCCACUGCUCUC -59
Get sequence