Mir-34-P3c

MirGeneDB ID

Cja-Mir-34-P3c

Family name

MIR-34 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-34-P1 Cja-Mir-34-P2a Cja-Mir-34-P2b Cja-Mir-34-P3a-v1 Cja-Mir-34-P3b

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021916.1: 151491366-151491427 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3a-v2 CM021916.1: 151489641-151489700 [+] UCSC Ensembl
Mir-34-P3a-v1 CM021916.1: 151489642-151489700 [+] UCSC Ensembl
Mir-34-P3b CM021916.1: 151491246-151491305 [+] UCSC Ensembl
Mir-34-P3c CM021916.1: 151491366-151491427 [+] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AAAUGCAGUGGCUACCUGUGUGUGAUGAGCUGGCAGUGUAUUGUUAGCUGGUUGAAUAUGUGAAUGGCAUCAGCUAACAUGCAACUGCUGUCUUAUUGCAUAUACUAUGAACAUCAGCGUGU

Get precursor sequence

Structure

        10          20        30         40        50        60
AAAUGCAGUGGCUACCU--     UG     C      -|    U          UGAAUAU 
                   GUGUG  AUGAG UGGCAG UGUAU GUUAGCUGGU       G
                   UAUAC  UAUUC GUCGUC ACGUA CAAUCGACUA       U
UGUGCGACUACAAGUAUCA     GU     U      A^    -          CGGUAAG 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Cja-Mir-34-P3c_5p

mirBase accession

None

Sequence

0- UGGCAGUGUAUUGUUAGCUGGU -22

Get sequence

Star sequence

Cja-Mir-34-P3c_3p*

mirBase accession

None

Sequence

40- CAGCUAACAUGCAACUGCUGUC -62

Get sequence