MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-34-P3b

Family name MIR-34 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-34-P1  Cja-Mir-34-P2a  Cja-Mir-34-P2b  Cja-Mir-34-P3a-v1  Cja-Mir-34-P3c 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3b  Isc-Mir-34  Laf-Mir-34-P3b  Lch-Mir-34-P3b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mgi-Mir-34  Mml-Mir-34-P3b  Mmr-Mir-34-P3b  Mmu-Mir-34-P3b  Mom-Mir-34  Neu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3b  Pau-Mir-34  Pbv-Mir-34-P3b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3b  Rph-Mir-34  Sha-Mir-34-P3b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 151491246-151491305 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3b)		 Mir-34-P3a-v2 CM021916.1: 151489641-151489700 [+] UCSC Ensembl
Mir-34-P3a-v1 CM021916.1: 151489642-151489700 [+] UCSC Ensembl
Mir-34-P3b CM021916.1: 151491246-151491305 [+] UCSC Ensembl
Mir-34-P3c CM021916.1: 151491366-151491427 [+] UCSC Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
CACGAGAAUCCACAAUGACCUGAAUCAGGUAGGCAGUGUGUUGUUAGCUGGCUGCUUAGGUCAAGUCAGCAGCCACAACUACCCUGCCACUUGCAUCUGGAUAAAUUCCUCUUGUCAGUG
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Structure
        10          20        30         40        50        60  
CACGAGAAUCCACAAUGA--| U  AU     A     U  -     UAGCU      UUAGGU 
                    CC GA  CAGGU GGCAG GU GUUGU     GGCUGC      \
                    GG CU  GUUCA CCGUC CA CAACA     CCGACG      C
GUGACUGUUCUCCUUAAAUA^ U  AC     -     C  U     -----      ACUGAA 
.       110       100        90         80             70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-34-P3b_5p (predicted)
mirBase accessionNone
Sequence 
0- AGGCAGUGUGUUGUUAGCUGGCUGC -25
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Star sequence

Cja-Mir-34-P3b_3p*
mirBase accessionNone
Sequence 
39- CAGCCACAACUACCCUGCCAC -60
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