MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-34-P1  Ete-Mir-34-P2a  Ete-Mir-34-P2b  Ete-Mir-34-P3c 
Orthologues Aae-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ovu-Mir-34  Pbv-Mir-34-P3b  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(echTel2)
JH980308: 48340498-48340558 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGUGGAAAGGAGCAGUGGCCAGAAUCAGGUAGGCAGUGUACUGUUAGCUGGCUGUGUUGGGUCAAUUCAGCAGCCACGACUACCCUGCCACUUGCUUCUGGAUAAACUCAUCUUGUUAAUG
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Structure
        10          20        30        40        50        60  
UGUGGAAAGGAGCAGUGG--|     U     A     U   CU   AGC       GUUGGG 
                    CCAGAA CAGGU GGCAG GUA  GUU   UGGCUGU      U
                    GGUCUU GUUCA CCGUC CAU  CAG   ACCGACG      C
GUAAUUGUUCUACUCAAAUA^     C     -     C   --   C--       ACUUAA 
 .       110       100        90           80          70
Deep sequencing
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CommentThis is a Group 2 in human according to Kim et al but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ete-Mir-34-P3b_5p (predicted)

mirBase accessionNone
Sequence
0- AGGCAGUGUACUGUUAGCUGGCUGUG -26
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Star sequence

Ete-Mir-34-P3b_3p* (predicted)

mirBase accessionNone
Sequence
37- CAGCAGCCACGACUACCCUGCCAC -61
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