Mir-34-P3b

MirGeneDB ID

Cli-Mir-34-P3b

Family name

MIR-34 (all species)

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-449b

Paralogues

Cli-Mir-34-P1 Cli-Mir-34-P2a Cli-Mir-34-P2b Cli-Mir-34-P3a Cli-Mir-34-P3c Cli-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold22: 2803312-2803372 [-]

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3d scaffold22: 2802157-2802215 [-]
Mir-34-P3c scaffold22: 2803153-2803209 [-]
Mir-34-P3b scaffold22: 2803312-2803372 [-]
Mir-34-P3a scaffold22: 2804282-2804344 [-]

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

AUCUUGCUCUGCAUGGAGUCUGUGUCUGGUAGGCAGUGUACUGCUAGCUGGCUGCCGUAUCUGGAUGGAGCAGUCACUCCUGCACUGCCACCUGCUGCAGGGCUGGCUCACUGCUGUUUAA

Get precursor sequence

Structure

        10          20         30        40        50        60  
AUCUUGCUCUGCAUGGAG--     -| CU   A         CUGCU  C       CGUAUC 
                    UCUGU GU  GGU GGCAGUGUA     AG UGGCUGC      U
                    GGACG CG  CCA CCGUCACGU     UC ACUGACG      G
AAUUUGUCGUCACUCGGUCG     U^ U-   -         CC---  -       AGGUAG 
 .       110       100         90         80            70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-34-P3b_5p

mirBase accession

MIMAT0038637

Sequence

0- AGGCAGUGUACUGCUAGCUGGCUGC -25

Get sequence

Star sequence

Cli-Mir-34-P3b_3p*

mirBase accession

MIMAT0038638

Sequence

41- AGUCACUCCUGCACUGCCAC -61

Get sequence