MirGeneDB 3.0
226 Columba livia microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC Li Mi Ov Pe Te To
Cli-Let-7-P1c cli-let-7c LET-7 GAGGUAG MIMAT0038379 MIMAT0038380 scaffold101 18430669 18430735 + Gnathostomata Bilateria No 1
Cli-Let-7-P1d cli-let-7a-2 LET-7 GAGGUAG MIMAT0038374 MIMAT0038376 scaffold367 862707 862773 - Gnathostomata Bilateria No 1
Cli-Let-7-P2a1 cli-let-7a-1 LET-7 GAGGUAG MIMAT0038374 MIMAT0038375 scaffold581 22176 22247 + Gnathostomata Bilateria Yes 1
Cli-Let-7-P2a2 cli-let-7a-3 LET-7 GAGGUAG MIMAT0038374 MIMAT0038375 scaffold383 360766 360836 - Gnathostomata Bilateria Yes
Cli-Let-7-P2a4 cli-let-7e LET-7 GAGGUAG MIMAT0038383 MIMAT0038384 scaffold454 1198025 1198095 - Gnathostomata Bilateria Yes 1
Cli-Let-7-P2b1 cli-let-7f LET-7 GAGGUAG MIMAT0038385 MIMAT0038386 scaffold581 22616 22692 + Gnathostomata Bilateria Yes 1
Cli-Let-7-P2b2 cli-let-7b LET-7 GAGGUAG None MIMAT0038378 scaffold383 359902 359978 - Gnathostomata Bilateria Yes 1
Cli-Let-7-P2b4 cli-let-7a-4 LET-7 GAGGUAG MIMAT0038374 MIMAT0038377 scaffold454 1197815 1197892 - Gnathostomata Bilateria Yes 1
Cli-Let-7-P2c1 cli-let-7d LET-7 GAGGUAG MIMAT0038381 MIMAT0038382 scaffold581 23616 23690 + Gnathostomata Bilateria Yes 1
Cli-Let-7-P2c2 cli-let-7i LET-7 GAGGUAG MIMAT0038389 MIMAT0038390 scaffold50 1403722 1403798 - Gnathostomata Bilateria Yes 1
Cli-Let-7-P2c3 cli-let-7g LET-7 GAGGUAG MIMAT0038387 MIMAT0038388 scaffold335 757947 758024 - Gnathostomata Bilateria Yes 1
Cli-Mir-1-P1 cli-mir-1a-2 MIR-1 GGAAUGU MIMAT0038393 MIMAT0038392 scaffold23 298717 298777 - Gnathostomata Bilateria No 1
Cli-Mir-1-P2 cli-mir-206 MIR-1 GGAAUGU MIMAT0038588 MIMAT0038589 C16600502 233 292 + Gnathostomata Bilateria No
Cli-Mir-1-P3 cli-mir-1a-1 MIR-1 GGAAUGU MIMAT0038391 MIMAT0038392 scaffold36 3131822 3131882 - Gnathostomata Bilateria No
Cli-Mir-1-P4 cli-mir-1b MIR-1 GGAAUGU MIMAT0038394 MIMAT0038395 scaffold391 951021 951083 - Gnathostomata Bilateria No 1
Cli-Mir-7-P1 cli-mir-7a-2 MIR-7 GGAAGAC MIMAT0038396 MIMAT0038398 scaffold150 999185 999248 - Gnathostomata Bilateria No 1 1
Cli-Mir-7-P2 cli-mir-7a-1 MIR-7 GGAAGAC MIMAT0038396 MIMAT0038397 scaffold432 147017 147080 + Gnathostomata Bilateria No 1
Cli-Mir-7-P3 cli-mir-7b MIR-7 GGAAGAC MIMAT0038400 None scaffold1374 107550 107615 - Gnathostomata Bilateria No 1
Cli-Mir-7-P4 cli-mir-7a-3 MIR-7 GGAAGAC MIMAT0038396 MIMAT0038399 scaffold133 436075 436137 + Gnathostomata Bilateria No 1
Cli-Mir-8-P1a cli-mir-200b MIR-8 AAUACUG MIMAT0038577 MIMAT0038578 scaffold693 2377086 2377145 + Vertebrata Nephrozoa No 1 1 1
Cli-Mir-8-P2a cli-mir-200a MIR-8 AACACUG MIMAT0038575 MIMAT0038576 scaffold693 2379416 2379476 + Vertebrata Nephrozoa No 1 1
Cli-Mir-8-P3a cli-mir-429 MIR-8 AAUACUG MIMAT0038634 MIMAT0038635 scaffold693 2382092 2382150 + Vertebrata Nephrozoa No
Cli-Mir-9-P2 cli-mir-9-2 MIR-9 CUUUGGU MIMAT0038401 MIMAT0038402 scaffold114 234187 234246 - Gnathostomata Bilateria No 1 1
Cli-Mir-9-P3 cli-mir-9-1 MIR-9 CUUUGGU MIMAT0038401 MIMAT0038402 scaffold404 120599 120660 - Gnathostomata Bilateria No 1 1
Cli-Mir-9-P4 cli-mir-9-3 MIR-9 CUUUGGU MIMAT0038401 MIMAT0038403 scaffold194 244986 245045 + Gnathostomata Bilateria No 1 1 1
Cli-Mir-10-P1b V cli-mir-10b MIR-10 ACCCUGU MIMAT0038406 MIMAT0038407 scaffold893 612555 612616 - Gnathostomata Eumetazoa 2 No 1 1
Cli-Mir-10-P1c V cli-mir-10a MIR-10 ACCCUGU MIMAT0038404 MIMAT0038405 scaffold265 1564493 1564554 + Gnathostomata Eumetazoa 2 No 1
Cli-Mir-10-P1d V cli-mir-10c MIR-10 ACCCUGU MIMAT0038408 MIMAT0038409 scaffold922 255116 255177 + Gnathostomata Eumetazoa 2 No
Cli-Mir-10-P2c cli-mir-99 MIR-10 ACCCGUA MIMAT0038478 MIMAT0038479 scaffold101 18429914 18429972 + Gnathostomata Eumetazoa Yes 1
Cli-Mir-10-P2d cli-mir-100-1 MIR-10 ACCCGUA MIMAT0038480 MIMAT0038481 scaffold367 869683 869739 - Gnathostomata Eumetazoa No
Cli-Mir-10-P3c cli-mir-125-2 MIR-10 CCCUGAG MIMAT0038496 MIMAT0038498 scaffold101 18463427 18463488 + Gnathostomata Eumetazoa No 1
Cli-Mir-10-P3d cli-mir-125-1 MIR-10 CCCUGAG MIMAT0038496 MIMAT0038497 scaffold367 846267 846328 - Gnathostomata Eumetazoa No 1 1 1
Cli-Mir-15-P1a cli-mir-15a MIR-15 AGCAGCA MIMAT0038410 MIMAT0038411 scaffold17 15185606 15185664 - Gnathostomata Olfactores No 1
Cli-Mir-15-P1b cli-mir-15b MIR-15 AGCAGCA MIMAT0038412 MIMAT0038413 scaffold258 1615632 1615691 + Gnathostomata Olfactores No
Cli-Mir-15-P1c cli-mir-15c MIR-15 AGCAGCA MIMAT0038414 MIMAT0038415 scaffold72 3554771 3554828 - Gnathostomata Olfactores No
Cli-Mir-15-P2a cli-mir-16a-1 MIR-15 AGCAGCA MIMAT0038416 MIMAT0038417 scaffold17 15185461 15185523 - Gnathostomata Olfactores No 1 1
Cli-Mir-15-P2b cli-mir-16a-2 MIR-15 AGCAGCA MIMAT0038416 MIMAT0038418 scaffold258 1615804 1615868 + Gnathostomata Olfactores No 1
Cli-Mir-15-P2c cli-mir-16b MIR-15 AGCAGCA MIMAT0038419 MIMAT0038420 scaffold72 3554294 3554358 - Gnathostomata Olfactores No 1
Cli-Mir-17-P1a cli-mir-17 MIR-17 AAAGUGC MIMAT0038421 MIMAT0038422 scaffold183 2837971 2838031 - Gnathostomata Vertebrata No 1
Cli-Mir-17-P1c cli-mir-106 MIR-17 AAAGUGC MIMAT0038487 MIMAT0038488 scaffold72 3452469 3452526 - Gnathostomata Vertebrata No
Cli-Mir-17-P2a cli-mir-18a MIR-17 AAGGUGC MIMAT0038423 MIMAT0038424 scaffold183 2837820 2837884 - Gnathostomata Vertebrata No 1
Cli-Mir-17-P2c cli-mir-18b MIR-17 AAGGUGC MIMAT0038425 MIMAT0038426 scaffold72 3452309 3452373 - Gnathostomata Vertebrata No 1
Cli-Mir-17-P4a cli-mir-20a MIR-17 AAAGUGC MIMAT0038432 MIMAT0038433 scaffold183 2837507 2837565 - Gnathostomata Vertebrata No 1 1
Cli-Mir-17-P4c cli-mir-20b MIR-17 AAAGUGC MIMAT0038434 MIMAT0038435 scaffold72 3452115 3452175 - Gnathostomata Vertebrata No 1 1
Cli-Mir-19-P1a cli-mir-19a MIR-19 GUGCAAA MIMAT0038427 MIMAT0038428 scaffold183 2837681 2837738 - Gnathostomata Vertebrata No 1 1
Cli-Mir-19-P2a cli-mir-19b-1 MIR-19 GUGCAAA MIMAT0038429 MIMAT0038430 scaffold183 2837370 2837430 - Gnathostomata Vertebrata No 1
Cli-Mir-19-P2c cli-mir-19b-2 MIR-19 GUGCAAA MIMAT0038431 MIMAT0038430 scaffold72 3451991 3452050 - Gnathostomata Vertebrata No 1
Cli-Mir-21 cli-mir-21 MIR-21 AGCUUAU MIMAT0038436 MIMAT0038437 scaffold580 435005 435064 - Vertebrata Vertebrata No
Cli-Mir-22-P1b cli-mir-22 MIR-22 AGCUGCC MIMAT0038438 MIMAT0038439 scaffold94 2621552 2621614 - Vertebrata Bilateria No 1 1
Cli-Mir-23-P2 cli-mir-23b MIR-23 UCACAUU MIMAT0038440 MIMAT0038441 scaffold226 156772 156831 + Gnathostomata Vertebrata Yes 1 1 1
Cli-Mir-26-P1 cli-mir-26-1 MIR-26 UCAAGUA MIMAT0038442 MIMAT0038443 scaffold370 399891 399951 - Gnathostomata Vertebrata No 1
Cli-Mir-26-P2 cli-mir-26-2 MIR-26 UCAAGUA MIMAT0038442 MIMAT0038444 scaffold32 1151298 1151358 + Gnathostomata Vertebrata No 1 1 1
Cli-Mir-27-P2 cli-mir-27b MIR-27 UCACAGU MIMAT0038445 MIMAT0038446 scaffold226 157004 157066 + Gnathostomata Vertebrata No 1
Cli-Mir-29-P1b V cli-mir-29b-1 MIR-29 AGCACCA MIMAT0038449 MIMAT0038450 scaffold137 49405 49468 - Gnathostomata Bilateria 2 No 1
Cli-Mir-29-P1d V cli-mir-29b-2 MIR-29 AGCACCA None MIMAT0038450 scaffold454 2208566 2208629 - Gnathostomata Bilateria 2 No 1
Cli-Mir-29-P2b cli-mir-29a-1 MIR-29 AGCACCA MIMAT0038447 MIMAT0038448 scaffold137 48230 48289 - Gnathostomata Bilateria No 1
Cli-Mir-29-P2d cli-mir-29a-2 MIR-29 AGCACCA None MIMAT0038448 scaffold454 2207703 2207762 - Gnathostomata Bilateria No 1
Cli-Mir-30-P1a cli-mir-30d MIR-30 GUAAACA MIMAT0038456 MIMAT0038457 scaffold419 3168635 3168692 - Gnathostomata Vertebrata No 1
Cli-Mir-30-P1b cli-mir-30a MIR-30 GUAAACA MIMAT0038451 MIMAT0038452 scaffold102 5103433 5103496 + Gnathostomata Vertebrata No 1 1 1
Cli-Mir-30-P1d cli-mir-30e MIR-30 GUAAACA MIMAT0038458 MIMAT0038459 scaffold391 336860 336923 - Gnathostomata Vertebrata No 1 1
Cli-Mir-30-P2b cli-mir-30c-2 MIR-30 GUAAACA MIMAT0038453 MIMAT0038455 scaffold102 5128901 5128962 + Gnathostomata Vertebrata No 1 1 1
Cli-Mir-30-P2d cli-mir-30c-1 MIR-30 GUAAACA MIMAT0038453 MIMAT0038454 scaffold391 335122 335181 - Gnathostomata Vertebrata No 1 1
Cli-Mir-31 cli-mir-31 MIR-31 GGCAAGA MIMAT0038460 MIMAT0038461 scaffold476 622320 622378 + Bilateria Bilateria No 1
Cli-Mir-32 cli-mir-32 MIR-32 AUUGCAC MIMAT0038462 MIMAT0038463 scaffold231 729048 729109 - Gnathostomata Gnathostomata No 1 1
Cli-Mir-33-P1 cli-mir-33-2 MIR-33 UGCAUUG MIMAT0038464 MIMAT0038466 scaffold146 1338945 1339004 + Gnathostomata Bilateria No 1 1
Cli-Mir-33-P3 cli-mir-33-1 MIR-33 UGCAUUG MIMAT0038464 MIMAT0038465 scaffold1086 144834 144894 - Gnathostomata Bilateria Yes 1 1
Cli-Mir-34-P1 cli-mir-34a MIR-34 GGCAGUG MIMAT0038467 MIMAT0038468 scaffold693 1562325 1562390 + Gnathostomata Bilateria No 1 1
Cli-Mir-34-P2a cli-mir-34b MIR-34 GGCAGUG MIMAT0038469 MIMAT0038470 scaffold77 2057114 2057172 + Vertebrata Bilateria No
Cli-Mir-34-P2b cli-mir-34c MIR-34 GGCAGUG MIMAT0038471 MIMAT0038472 scaffold77 2057489 2057543 + Vertebrata Bilateria No
Cli-Mir-34-P3a cli-mir-449c MIR-34 GGCAGUG MIMAT0038639 MIMAT0038640 scaffold22 2804282 2804344 - Gnathostomata Bilateria Yes 1 1
Cli-Mir-34-P3b cli-mir-449b MIR-34 GGCAGUG MIMAT0038637 MIMAT0038638 scaffold22 2803312 2803372 - Gnathostomata Bilateria Yes
Cli-Mir-34-P3c cli-mir-449a MIR-34 GGCAGUG MIMAT0038636 None scaffold22 2803153 2803209 - Gnathostomata Bilateria Unknown 1
Cli-Mir-34-P3d cli-mir-449d MIR-34 GGCAGUG MIMAT0038641 MIMAT0038642 scaffold22 2802157 2802215 - Gnathostomata Bilateria No 1
Cli-Mir-92-P1a cli-mir-92-1 MIR-92 AUUGCAC MIMAT0038473 MIMAT0038474 scaffold183 2837255 2837313 - Gnathostomata Bilateria No 1
Cli-Mir-92-P1c cli-mir-92-2 MIR-92 AUUGCAC MIMAT0038475 MIMAT0038474 scaffold72 3451822 3451883 - Gnathostomata Bilateria No 1
Cli-Mir-92-P2a cli-mir-367 MIR-92 AUUGCAC None MIMAT0038627 scaffold942 1626979 1627038 + Gnathostomata Bilateria Unknown
Cli-Mir-92-P2c cli-mir-363 MIR-92 AUUGCAC MIMAT0038622 MIMAT0038623 scaffold72 3451682 3451746 - Gnathostomata Bilateria No 1
Cli-Mir-96-P1 cli-mir-96 MIR-96 UUGGCAC MIMAT0038476 MIMAT0038477 scaffold121 1261712 1261775 + Bilateria Bilateria No
Cli-Mir-96-P2 cli-mir-182 MIR-96 UUGGCAA MIMAT0038556 MIMAT0038557 scaffold121 1262259 1262323 + Bilateria Bilateria No 1
Cli-Mir-96-P3 V cli-mir-183 MIR-96 AUGGCAC MIMAT0038558 MIMAT0038559 scaffold121 1261591 1261652 + Bilateria Bilateria 2 No 1 1
Cli-Mir-101-P1 V cli-mir-101-1 MIR-101 ACAGUAC MIMAT0038482 MIMAT0038483 scaffold7 15720708 15720766 - Vertebrata Vertebrata 2 No 1 1
Cli-Mir-101-P2 V cli-mir-101-2 MIR-101 ACAGUAC MIMAT0038484 MIMAT0038483 scaffold6 3523034 3523092 - Vertebrata Vertebrata 2 No 1
Cli-Mir-103-P1 cli-mir-107 MIR-103 GCAGCAU MIMAT0038489 MIMAT0038490 scaffold112 365368 365427 - Gnathostomata Bilateria No 1
Cli-Mir-103-P2 cli-mir-103-2 MIR-103 GCAGCAU MIMAT0038486 MIMAT0038485 scaffold203 1112346 1112405 - Gnathostomata Bilateria No 1
Cli-Mir-103-P4 cli-mir-103-1 MIR-103 GCAGCAU None MIMAT0038485 scaffold79 13537713 13537772 + Gnathostomata Bilateria No 1
Cli-Mir-122 cli-mir-122 MIR-122 GGAGUGU MIMAT0038491 MIMAT0038492 scaffold1361 24153 24210 + Vertebrata Vertebrata No 1 1 1
Cli-Mir-124-P1 V cli-mir-124-1 MIR-124 AAGGCAC MIMAT0038493 MIMAT0038494 scaffold195 1203220 1203278 - Gnathostomata Bilateria 2 No 1
Cli-Mir-124-P3 V cli-mir-124-2 MIR-124 AAGGCAC MIMAT0038495 MIMAT0038494 scaffold36 2496183 2496242 - Gnathostomata Bilateria 2 No 1
Cli-Mir-126-P2 V cli-mir-126 MIR-126 CGUACCG MIMAT0038499 MIMAT0038500 scaffold642 1958266 1958324 - Vertebrata Olfactores 3 No 1 1
Cli-Mir-128-P1 cli-mir-128-2 MIR-128 CACAGUG MIMAT0038502 MIMAT0038501 scaffold66 1465306 1465363 - Gnathostomata Vertebrata No 1 1
Cli-Mir-128-P2 cli-mir-128-1 MIR-128 CACAGUG None MIMAT0038501 scaffold327 1216461 1216516 + Gnathostomata Vertebrata No 1 1
Cli-Mir-129-P2 cli-mir-129 MIR-129 UUUUUGC MIMAT0038503 MIMAT0038504 scaffold121 1772002 1772066 - Gnathostomata Chordata No 1 1 1
Cli-Mir-130-P1a cli-mir-130c MIR-130 AGUGCAA MIMAT0038507 MIMAT0038508 scaffold1320 505488 505546 - Gnathostomata Vertebrata No 1
Cli-Mir-130-P1b cli-mir-130a MIR-130 AGUGCAA MIMAT0038505 MIMAT0038506 scaffold580 630675 630737 + Gnathostomata Vertebrata No 1
Cli-Mir-130-P2a cli-mir-301b MIR-130 AGUGCAA MIMAT0038613 MIMAT0038614 scaffold1320 504219 504281 - Gnathostomata Vertebrata No 1
Cli-Mir-130-P2b cli-mir-301a MIR-130 AGUGCAA MIMAT0038611 MIMAT0038612 scaffold580 631257 631318 + Gnathostomata Vertebrata No 1 1
Cli-Mir-130-P3a cli-mir-454 MIR-130 AGUGCAA MIMAT0038644 MIMAT0038645 scaffold1320 497731 497794 - Gnathostomata Vertebrata No
Cli-Mir-133-P1 V cli-mir-133a-1 MIR-133 UUGGUCC MIMAT0038509 MIMAT0038510 scaffold23 295639 295698 - Gnathostomata Bilateria 2 No 1
Cli-Mir-133-P2 V cli-mir-133b MIR-133 UUGGUCC MIMAT0038511 MIMAT0038512 scaffold119 6659 6717 + Gnathostomata Bilateria 2 No 1
Cli-Mir-133-P3 V cli-mir-133a-2 MIR-133 UUGGUCC MIMAT0038509 MIMAT0038510 scaffold36 3119758 3119817 - Gnathostomata Bilateria 2 No
Cli-Mir-133-P4 V None MIR-133 UUGGUCC None None scaffold391 950891 950948 - Gnathostomata Bilateria 2 No 1
Cli-Mir-135-P1 cli-mir-135-1 MIR-135 AUGGCUU MIMAT0038514 MIMAT0038515 scaffold335 781848 781908 - Gnathostomata Chordata No 1
Cli-Mir-135-P2 cli-mir-135-2 MIR-135 AUGGCUU MIMAT0038514 MIMAT0038516 scaffold557 971015 971074 - Gnathostomata Chordata No 1
Cli-Mir-135-P4 cli-mir-135-3 MIR-135 AUGGCUU MIMAT0038514 MIMAT0038517 scaffold176 178807 178867 + Gnathostomata Chordata No 1
Cli-Mir-137-P1 V cli-mir-137a MIR-137 UAUUGCU MIMAT0038518 MIMAT0038519 scaffold7 3584717 3584775 - Gnathostomata Bilateria 2 No 1
Cli-Mir-137-P3 cli-mir-137b MIR-137 UAUUGCU MIMAT0038520 MIMAT0038521 scaffold2489 3952 4009 - Gnathostomata Bilateria No 1
Cli-Mir-138-P1 cli-mir-138-1 MIR-138 GCUGGUG MIMAT0038522 MIMAT0038523 scaffold380 712512 712572 + Vertebrata Vertebrata No 1
Cli-Mir-138-P2 cli-mir-138-2 MIR-138 GCUGGUG MIMAT0038522 MIMAT0038524 scaffold123 10795004 10795071 + Vertebrata Vertebrata Yes 1
Cli-Mir-139 cli-mir-139 MIR-139 CUACAGU MIMAT0038525 MIMAT0038526 scaffold1323 18345 18403 + Gnathostomata Gnathostomata No 1 1
Cli-Mir-140-P2 V cli-mir-140 MIR-140 CCACAGG MIMAT0038527 MIMAT0038528 scaffold123 5480472 5480533 - Gnathostomata Vertebrata 2 No 1
Cli-Mir-142-P2 V cli-mir-142 MIR-142 AUAAAGU MIMAT0038529 MIMAT0038530 scaffold281 47104 47163 + Gnathostomata Vertebrata 4 No 1
Cli-Mir-143 cli-mir-143 MIR-143 GAGAUGA MIMAT0038531 MIMAT0038532 scaffold395 918258 918312 + Vertebrata Vertebrata Yes
Cli-Mir-144 V None MIR-144 GAUAUCA None None SRR516967 48 105 + Vertebrata Vertebrata 2 No 1
Cli-Mir-145 cli-mir-145 MIR-145 UCCAGUU MIMAT0038533 MIMAT0038534 scaffold395 918682 918741 + Vertebrata Vertebrata No
Cli-Mir-146-P1 cli-mir-146b MIR-146 GAGAACU MIMAT0038537 MIMAT0038538 scaffold314 30548 30608 + Gnathostomata Vertebrata No 1 1
Cli-Mir-146-P2 cli-mir-146c MIR-146 GAGAACU MIMAT0038539 MIMAT0038540 scaffold203 1412191 1412255 - Gnathostomata Vertebrata Yes 1
Cli-Mir-146-P4 cli-mir-146a MIR-146 GAGAACU MIMAT0038535 MIMAT0038536 scaffold79 8894981 8895044 + Gnathostomata Vertebrata No 1 1
Cli-Mir-147 cli-mir-147 MIR-147 UGUGCGG None MIMAT0038541 scaffold702 40106 40165 + Vertebrata Vertebrata No 1
Cli-Mir-148-P1 cli-mir-148a MIR-148 CAGUGCA MIMAT0038542 MIMAT0038543 scaffold699 533825 533884 - Gnathostomata Vertebrata No 1
Cli-Mir-148-P1-as None MIR-148 AAGUUCU None None scaffold699 533827 533886 + Neoaves Vertebrata No 1
Cli-Mir-148-P4 cli-mir-148b MIR-148 CAGUGCA None MIMAT0038544 scaffold922 322361 322420 + Gnathostomata Vertebrata No 1
Cli-Mir-153-P1 cli-mir-153b MIR-153 UGCAUAG MIMAT0038547 MIMAT0038548 scaffold337 193415 193475 - Gnathostomata Bilateria No 1
Cli-Mir-153-P2 cli-mir-153a MIR-153 UGCAUAG MIMAT0038545 MIMAT0038546 scaffold32 1622023 1622081 - Gnathostomata Bilateria No 1
Cli-Mir-155 cli-mir-155 MIR-155 UAAUGCU MIMAT0038549 None scaffold101 7953883 7953943 - Vertebrata Vertebrata Unknown
Cli-Mir-181-P1a cli-mir-181a-1 MIR-181 ACAUUCA MIMAT0038550 MIMAT0038551 scaffold7 7344755 7344816 + Gnathostomata Vertebrata No 1 1
Cli-Mir-181-P1b cli-mir-181a-2 MIR-181 ACAUUCA MIMAT0038550 MIMAT0038552 scaffold686 919231 919290 - Gnathostomata Vertebrata No
Cli-Mir-181-P2a cli-mir-181b-1 MIR-181 ACAUUCA MIMAT0038553 MIMAT0038554 scaffold7 7344940 7344999 + Gnathostomata Vertebrata Yes
Cli-Mir-181-P2b cli-mir-181b-2 MIR-181 ACAUUCA MIMAT0038553 MIMAT0038555 scaffold686 918309 918368 - Gnathostomata Vertebrata No
Cli-Mir-184 cli-mir-184 MIR-184 GGACGGA MIMAT0038560 MIMAT0038561 scaffold506 3395665 3395726 - Nephrozoa Nephrozoa No 1
Cli-Mir-187 cli-mir-187 MIR-187 CGUGUCU MIMAT0038562 MIMAT0038563 scaffold231 68271 68328 + Osteichthyes Osteichthyes Yes 1
Cli-Mir-190-P1 None MIR-190 GAUAUGU None None scaffold87 1114482 1114540 - Gnathostomata Bilateria No 1 1
Cli-Mir-192-P2 cli-mir-215 MIR-192 UGACCUA MIMAT0038594 MIMAT0038595 scaffold54 1524407 1524465 - Vertebrata Vertebrata No 1 1
Cli-Mir-193-P1a cli-mir-193 MIR-193 ACUGGCC MIMAT0038566 MIMAT0038567 scaffold251 987730 987788 + Vertebrata Bilateria No 1
Cli-Mir-193-P2a cli-mir-365-1 MIR-193 AAUGCCC MIMAT0038624 MIMAT0038625 scaffold251 992954 993014 + Vertebrata Bilateria Yes 1
Cli-Mir-193-P2b cli-mir-365-2 MIR-193 AAUGCCC MIMAT0038626 MIMAT0038625 scaffold111 348905 348967 - Vertebrata Bilateria No 1
Cli-Mir-194-P2 cli-mir-194 MIR-194 GUAACAG MIMAT0038568 MIMAT0038569 scaffold54 1524720 1524775 - Vertebrata Vertebrata No 1 1
Cli-Mir-196-P1 cli-mir-196-3 MIR-196 AGGUAGU MIMAT0038570 MIMAT0038572 scaffold699 1139790 1139848 - Gnathostomata Olfactores No 1
Cli-Mir-196-P3 cli-mir-196-1 MIR-196 AGGUAGU MIMAT0038570 MIMAT0038571 scaffold265 1508615 1508674 + Gnathostomata Olfactores No 1
Cli-Mir-196-P4 cli-mir-196-2 MIR-196 AGGUAGU MIMAT0038570 None scaffold922 197745 197802 + Gnathostomata Olfactores No
Cli-Mir-199-P1 V cli-mir-199-1 MIR-199 CAGUAGU MIMAT0038573 MIMAT0038574 scaffold7 10450277 10450337 + Gnathostomata Vertebrata 3 No 1
Cli-Mir-199-P2 V cli-mir-199-2 MIR-199 CAGUAGU MIMAT0038573 MIMAT0038574 scaffold835 50412 50472 + Gnathostomata Vertebrata 3 No 1
Cli-Mir-202 cli-mir-202 MIR-202 UCCUAUG MIMAT0038579 None scaffold262 1438281 1438338 + Vertebrata Vertebrata Unknown 1
Cli-Mir-204-P1 cli-mir-204-2 MIR-204 UCCCUUU MIMAT0038580 MIMAT0038582 scaffold506 653116 653173 + Gnathostomata Vertebrata No 1 1
Cli-Mir-204-P2 cli-mir-204-1 MIR-204 UCCCUUU MIMAT0038580 MIMAT0038581 scaffold148 920658 920717 + Gnathostomata Vertebrata No 1 1
Cli-Mir-204-P4 cli-mir-204-3 MIR-204 UCCCUUU MIMAT0038580 MIMAT0038583 scaffold194 1274466 1274522 + Gnathostomata Vertebrata No 1 1
Cli-Mir-205-P2 None MIR-205 CCUUCAU None None scaffold121 707087 707145 + Gnathostomata Vertebrata No 1
Cli-Mir-205-P4 cli-mir-205a MIR-205 CCUUCAU MIMAT0038584 MIMAT0038585 scaffold454 2679550 2679609 + Gnathostomata Vertebrata No
Cli-Mir-210 cli-mir-210 MIR-210 UGUGCGU MIMAT0038590 MIMAT0038591 scaffold346 1057671 1057731 - Bilateria Bilateria No
Cli-Mir-214 V cli-mir-214 MIR-214 CAGCAGG MIMAT0038592 MIMAT0038593 scaffold7 10456145 10456207 + Gnathostomata Gnathostomata 2 No
Cli-Mir-216-P2a cli-mir-216b MIR-216 AAUCUCU MIMAT0038598 MIMAT0038599 scaffold628 125966 126027 + Vertebrata Nephrozoa No 1
Cli-Mir-216-P2b cli-mir-216a MIR-216 AAUCUCA MIMAT0038596 MIMAT0038597 scaffold628 130781 130841 + Vertebrata Nephrozoa No 1
Cli-Mir-217 V cli-mir-217 MIR-217 ACUGCAU MIMAT0038600 MIMAT0038601 scaffold628 133577 133635 + Chordata Chordata 2 No 1
Cli-Mir-218-P2 cli-mir-218-1 MIR-218 UGUGCUU MIMAT0038602 MIMAT0038603 scaffold38 14206876 14206939 - Gnathostomata Vertebrata No 1
Cli-Mir-218-P4 cli-mir-218-2 MIR-218 UGUGCUU MIMAT0038602 MIMAT0038603 scaffold79 13392693 13392756 + Gnathostomata Vertebrata No 1 1
Cli-Mir-219-P2 None MIR-219 GAUUGUC None None scaffold2035 7056 7122 + Gnathostomata Bilateria No 1
Cli-Mir-221-P1a cli-mir-222a MIR-221 GCUACAU MIMAT0038606 MIMAT0038607 scaffold68 1295199 1295261 + Gnathostomata Vertebrata No 1 1
Cli-Mir-221-P1c cli-mir-222b MIR-221 GCUACAU None MIMAT0038608 scaffold72 1257573 1257639 + Gnathostomata Vertebrata Yes 1 1
Cli-Mir-221-P2a cli-mir-221 MIR-221 GCUACAU MIMAT0038604 MIMAT0038605 scaffold68 1295720 1295782 + Gnathostomata Vertebrata No 1
Cli-Mir-223 cli-mir-223 MIR-223 GUCAGUU MIMAT0038609 MIMAT0038610 scaffold375 204610 204672 + Vertebrata Vertebrata No 1
Cli-Mir-338-P1 cli-mir-338a MIR-338 CCAGCAU MIMAT0038618 MIMAT0038619 scaffold1084 334966 335025 + Vertebrata Vertebrata No 1 1
Cli-Mir-338-P2 cli-mir-338b MIR-338 CCAGCAU MIMAT0038620 MIMAT0038621 scaffold331 82791 82851 + Vertebrata Vertebrata No 1 1
Cli-Mir-375 cli-mir-375 MIR-375 UUGUUCG MIMAT0038628 MIMAT0038629 scaffold32 1406275 1406332 - Nephrozoa Nephrozoa No 1
Cli-Mir-383 V cli-mir-383 MIR-383 GAUCAGA MIMAT0038630 MIMAT0038631 scaffold38 1608644 1608705 + Tetrapoda Tetrapoda 2 No
Cli-Mir-425 cli-mir-425 MIR-425 AUGACAC MIMAT0038632 MIMAT0038633 scaffold277 2757276 2757337 + Gnathostomata Gnathostomata No 1
Cli-Mir-430-P1 cli-mir-302b-1 MIR-430 AAGUGCU None MIMAT0038616 scaffold942 1626026 1626086 + Gnathostomata Vertebrata Unknown 1 1
Cli-Mir-430-P2 cli-mir-302c MIR-430 AAGUGCU None MIMAT0038617 scaffold942 1626310 1626366 + Gnathostomata Vertebrata No
Cli-Mir-430-P3 cli-mir-302a MIR-430 AAGUGCU None MIMAT0038615 scaffold942 1626451 1626510 + Gnathostomata Vertebrata No 1
Cli-Mir-430-P4 cli-mir-302b-2 MIR-430 AAGUGCU None MIMAT0038616 scaffold942 1626806 1626867 + Gnathostomata Vertebrata No
Cli-Mir-451 cli-mir-451 MIR-451 AACCGUU MIMAT0038643 scaffold94 3184914 3184955 - Vertebrata Vertebrata NA 1
Cli-Mir-455 V cli-mir-455 MIR-455 AUGUGCC MIMAT0038646 MIMAT0038647 scaffold955 271163 271220 - Vertebrata Vertebrata 3 No
Cli-Mir-456 cli-mir-456 MIR-456 AGGCUGG None MIMAT0038648 scaffold109 2388553 2388613 + Vertebrata Vertebrata Yes 1
Cli-Mir-458 cli-mir-458 MIR-458 UAGCUCU MIMAT0038649 MIMAT0038650 scaffold636 126032 126089 + Osteichthyes Osteichthyes No 1
Cli-Mir-458-as None MIR-458 UAGCUCU None None scaffold636 126030 126087 - Neognathae Osteichthyes No 1
Cli-Mir-459 cli-mir-459 MIR-459 CAGUAAC MIMAT0038651 None scaffold101 3576180 3576240 - Vertebrata Vertebrata Unknown 1
Cli-Mir-460-P1 None MIR-460 CUGCAUU None None scaffold517 1526048 1526106 + Osteichthyes Osteichthyes No 1
Cli-Mir-460-P2 None MIR-460 CCUCAUU None None scaffold72 1902296 1902352 + Osteichthyes Osteichthyes No 1
Cli-Mir-489 V cli-mir-489 MIR-489 UGACAUC MIMAT0038656 MIMAT0038657 scaffold169 1811717 1811776 + Osteichthyes Osteichthyes 2 No 1
Cli-Mir-490 None MIR-490 AACCUGG None None scaffold334 335624 335685 - Amniota Amniota No 1
Cli-Mir-499 cli-mir-499 MIR-499 UAAGACU MIMAT0038660 MIMAT0038661 scaffold100 2000109 2000168 - Vertebrata Vertebrata No 1
Cli-Mir-551-P1 cli-mir-551a MIR-551 CGACCCA MIMAT0038662 MIMAT0038663 scaffold693 3837059 3837117 - Vertebrata Vertebrata No 1 1
Cli-Mir-551-P2 cli-mir-551b MIR-551 CGACCCA MIMAT0038664 MIMAT0038665 scaffold698 3540893 3540953 - Vertebrata Vertebrata Yes 1
Cli-Mir-599 cli-mir-599 MIR-599 UGUGUCA None MIMAT0038666 scaffold1 1574686 1574745 + Sarcopterygii Sarcopterygii No
Cli-Mir-737 cli-mir-737 MIR-737 UUUUUUU MIMAT0038667 None scaffold244 3380836 3380896 - Osteichthyes Osteichthyes Unknown
Cli-Mir-875 cli-mir-875 MIR-875 AUACCUC MIMAT0038668 MIMAT0038669 scaffold1 1574523 1574579 + Vertebrata Vertebrata No 1
Cli-Mir-1306 None MIR-1306 CACCUCC None None scaffold20 625489 625549 + Gnathostomata Gnathostomata Unknown 1 1
Cli-Mir-1329 V cli-mir-1329 MIR-1329 ACAGUGA MIMAT0038672 MIMAT0038673 scaffold102 20718008 20718068 + Vertebrata Vertebrata 2 No 1
Cli-Mir-1388 cli-mir-1388 MIR-1388 GGACUGU MIMAT0038674 MIMAT0038675 scaffold36 1588269 1588329 - Gnathostomata Gnathostomata No 1
Cli-Mir-1416 cli-mir-1416 MIR-1416 CCUUAAC MIMAT0038676 MIMAT0038677 scaffold148 1182294 1182352 - Amniota Amniota No 1
Cli-Mir-1451 cli-mir-1451 MIR-1451 CGCACAG MIMAT0038678 MIMAT0038679 scaffold99 1351156 1351214 + Neognathae Neognathae No 1
Cli-Mir-1467 cli-mir-1467 MIR-1467 UCACACC MIMAT0038680 MIMAT0038681 scaffold216 4187745 4187809 - Neognathae Neognathae No 1
Cli-Mir-1552 cli-mir-1552 MIR-1552 UAGUGCG MIMAT0038683 MIMAT0038684 scaffold160 1494072 1494129 - Neognathae Neognathae No
Cli-Mir-1559 cli-mir-1559 MIR-1559 UCGAUGC MIMAT0038685 MIMAT0038686 scaffold159 524666 524725 - Neognathae Neognathae Unknown
Cli-Mir-1641 cli-mir-1641 MIR-1641 GAGGAUU MIMAT0038687 None scaffold490 1454677 1454735 - Archosauria Archosauria Unknown 1
Cli-Mir-1662 cli-mir-1662 MIR-1662 UGACAUC MIMAT0038689 MIMAT0038690 scaffold450 607999 608056 - Tetrapoda Tetrapoda No 1
Cli-Mir-1677-P1 cli-mir-1677 MIR-1677 UGACUUC MIMAT0038691 MIMAT0038692 scaffold1299 480160 480216 + Archelosauria Diapsida No 1
Cli-Mir-1677-P2 None MIR-1677 CUUUAAU None None scaffold309 1394353 1394414 + Archelosauria Diapsida Unknown 1 1
Cli-Mir-1677-P4 cli-mir-1784 MIR-1677 GACUUAA MIMAT0038699 None scaffold232 10503091 10503148 - Archelosauria Diapsida No
Cli-Mir-1677-P5 cli-mir-1803-1 MIR-1677 UUGACUU MIMAT0038703 MIMAT0038704 scaffold173 2790627 2790680 + Neognathae Diapsida No
Cli-Mir-1677-P6 None MIR-1677 UGACUUA None None scaffold231 75600 75657 + Neognathae Diapsida No
Cli-Mir-1720 cli-mir-1720 MIR-1720 AAGCAAC MIMAT0038693 MIMAT0038694 scaffold150 999054 999114 - Diapsida Diapsida No
Cli-Mir-1729 cli-mir-1729 MIR-1729 UCCCUUA MIMAT0038695 MIMAT0038696 scaffold20 27908 27969 + Neognathae Neognathae No
Cli-Mir-1781 cli-mir-1781 MIR-1781 UUAAAUC None MIMAT0038697 scaffold146 3197333 3197391 + Neognathae Neognathae No
Cli-Mir-1788 cli-mir-1788 MIR-1788 AGGCAGC MIMAT0038700 MIMAT0038701 scaffold32 1391518 1391576 - Vertebrata Vertebrata Yes 1
Cli-Mir-1805 cli-mir-1805 MIR-1805 GUAUUGG MIMAT0038705 MIMAT0038706 scaffold31 6825942 6826002 - Tetrapoda Tetrapoda No 1
Cli-Mir-2131 cli-mir-2131 MIR-2131 UGCAGAA MIMAT0038707 MIMAT0038708 scaffold476 26740 26804 - Neognathae Neognathae No
Cli-Mir-2188 cli-mir-2188 MIR-2188 AGGUCCA MIMAT0038709 MIMAT0038710 scaffold497 1693231 1693290 - Gnathostomata Gnathostomata No
Cli-Mir-2954 cli-mir-2954 MIR-2954 AUCCCCA MIMAT0038711 MIMAT0038712 scaffold476 14816 14876 + Neognathae Neognathae Yes 1 1
Cli-Mir-2970 cli-mir-2970 MIR-2970 ACAGUCA MIMAT0038713 MIMAT0038714 scaffold277 2757543 2757601 + Sarcopterygii Sarcopterygii No 1 1
Cli-Mir-2984 cli-mir-2984 MIR-2984 GCCUGCU MIMAT0038715 None scaffold167 918738 918804 + Neognathae Neognathae Yes 1
Cli-Mir-7463 None MIR-7463 UUACUUU None None scaffold274 1774180 1774241 - Diapsida Diapsida Unknown 1
Cli-Mir-9616 cli-mir-9616 MIR-9616 UGAGCUG MIMAT0038721 MIMAT0038722 scaffold32 1124437 1124505 - C. livia C. livia No 1
Cli-Mir-9619 cli-mir-9619 MIR-9619 UUUGCCU MIMAT0038727 MIMAT0038728 scaffold7 6214561 6214617 - Neoaves Neoaves No 1
Cli-Mir-9621 cli-mir-9621 MIR-9621 CCCGUUG MIMAT0038731 MIMAT0038732 scaffold123 6395738 6395795 - C. livia C. livia No 1
Cli-Mir-9622 cli-mir-9622 MIR-9622 CCGUCGG MIMAT0038735 MIMAT0038736 scaffold79 5422822 5422880 + C. livia C. livia No 1
Cli-Mir-9623 cli-mir-9623 MIR-9623 UACCUUU MIMAT0038737 MIMAT0038738 scaffold93 1928134 1928192 - C. livia C. livia No
Cli-Mir-9625 cli-mir-9625 MIR-9625 UGUCGGA MIMAT0038741 MIMAT0038742 scaffold693 1982645 1982702 - C. livia C. livia No 1 1
Cli-Mir-9627 cli-mir-9627 MIR-9627 AGCGUGG MIMAT0038745 MIMAT0038746 scaffold240 123101 123158 + C. livia C. livia No 1
Cli-Mir-9631 cli-mir-9631 MIR-9631 AGCCAGG MIMAT0038753 MIMAT0038754 scaffold87 2262197 2262257 + C. livia C. livia No 1
Cli-Mir-9633 cli-mir-9633 MIR-9633 GAGGAUG MIMAT0038757 MIMAT0038758 scaffold87 761143 761206 - C. livia C. livia No
Cli-Mir-9634 cli-mir-9634 MIR-9634 UUGUUCC MIMAT0038761 MIMAT0038762 scaffold38 7984739 7984802 - C. livia C. livia No 1 1
Cli-Mir-9636 cli-mir-9636 MIR-9636 GCAAAAC MIMAT0038765 MIMAT0038766 scaffold1590 232480 232547 + C. livia C. livia No 1
Cli-Mir-9640 cli-mir-9640 MIR-9640 CAGAUGG MIMAT0038773 MIMAT0038774 scaffold684 20874 20935 + C. livia C. livia No 1
Cli-Mir-9643 cli-mir-9643 MIR-9643 GCGGCCG MIMAT0038779 MIMAT0038780 scaffold182 66204 66259 + C. livia C. livia No 1 1
Cli-Mir-9644 cli-mir-9644 MIR-9644 GGUGUGG MIMAT0038781 MIMAT0038782 scaffold101 12247024 12247081 + C. livia C. livia No 1
Cli-Mir-9646 cli-mir-9646 MIR-9646 AGAACAC MIMAT0038785 MIMAT0038786 scaffold10 3459174 3459228 - C. livia C. livia No
Cli-Mir-9648 cli-mir-9648 MIR-9648 AUGCCAU MIMAT0038789 MIMAT0038790 scaffold226 298722 298780 - C. livia C. livia No

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix