MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-146-P4

Family name MIR-146 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-146a
Paralogues Cli-Mir-146-P1  Cli-Mir-146-P2 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Cfa-Mir-146-P4  Cja-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Ebu-Mir-146  Eca-Mir-146-P4-v1  Gga-Mir-146-P4  Hsa-Mir-146-P4  Laf-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmr-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Neu-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pab-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold79: 8894981-8895044 [+]
Seed GAGAACU
Precursor
(pre-Mir +30nt flank)		 
CUUAAAAUGAAUGUCGUGUAUUCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUAAUUGAAUUCGCUGUCAGACCCAUGGGGCUCAGUUCUUCAGCUUGGAUAUUUCUGUCUUCACAUACACAG
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Structure
        10           20        30        40        50        60  
CUUAAAAUGAAUGUCGU---|     UC    UU         A           GUAAUUGAA 
                    GUAUUC  AGCU  GAGAACUGA UUCCAUGGGUU         \
                    UAUAGG  UCGA  UUCUUGACU GGGGUACCCAG         U
GACACAUACACUUCUGUCUU^     U-    C-         C           ACUGUCGCU 
  120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-146-P4_5p
mirBase accessionMIMAT0038535
Sequence 
0- UGAGAACUGAAUUCCAUGGGUUG -23
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Star sequence

Cli-Mir-146-P4_3p*
mirBase accessionMIMAT0038536
Sequence 
42- ACCCAUGGGGCUCAGUUCUUCA -64
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