MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-146-P4

Family name MIR-146 (all species)
Seed GAGAACU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-146-P1  Spt-Mir-146-P2 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Gga-Mir-146-P4  Hsa-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01004083.1: 20943-21005 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAACAUGAACAUCAUGUAUCCUCAAGCUUUGAGAACUGAAUUCCUUGGGUUGUAAUUGAAACACUGUCAGACCCAUGGGGCUCAGUUCUUCAGCUUGGAUAGCUUUGUCUUCAGGAGAUCAA
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Structure
        10            20        30        40        50        60 
GUAACAUGAACAUCAUG----|    UC     UU         A    U      GUAAUUGA 
                     UAUCC  AAGCU  GAGAACUGA UUCC UGGGUU        A
                     AUAGG  UUCGA  UUCUUGACU GGGG ACCCAG        A
AACUAGAGGACUUCUGUUUCG^    --     C-         C    U      ACUGUCAC 
 120       110       100           90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-146-P4_5p (predicted)

mirBase accessionNone
Sequence
0- UGAGAACUGAAUUCCUUGGGUUG -23
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Star sequence

Spt-Mir-146-P4_3p* (predicted)

mirBase accessionNone
Sequence
41- ACCCAUGGGGCUCAGUUCUUCA -63
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