MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-146-P4

Family name MIR-146 (all species)
Seed GAGAACU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-146a
Paralogues Ocu-Mir-146-P1 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Gga-Mir-146-P4  Hsa-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Oan-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 chr3: 41906611-41906668 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUGGAAAGCCUAUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGUGUCAGACCUGUGAAAUUUAGUUCUUCAGCUGGGAUAUCUCUGUCAUCAUGGACGUGAG
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Structure
        10            20        30        40        50        
CACUGGAAAGCCUAUGU----|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                     UAUAGG GUCGA  UUCUUGAUUUAA GUGUCCAG     G
GAGUGCAGGUACUACUGUCUC^     -     C-            A        ACUGU 
      110       100         90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-146-P4_5p
mirBase accessionMIMAT0048253
Sequence 
0- UGAGAACUGAAUUCCAUGGGUUG -23
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Star sequence

Ocu-Mir-146-P4_3p* (predicted)
mirBase accessionMIMAT0048254
Sequence 
35- ACCUGUGAAAUUUAGUUCUUCAG -58
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