Mir-146-P4

MirGeneDB ID

Cpo-Mir-146-P4

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-146a

Paralogues

Cpo-Mir-146-P1

Orthologues

Ami-Mir-146-P4 Bta-Mir-146-P4-v1 Bta-Mir-146-P4-v2 Cfa-Mir-146-P4 Cli-Mir-146-P4 Cmi-Mir-146-P4 Cpi-Mir-146-P4 Dno-Mir-146-P4 Dre-Mir-146-P4-v1 Dre-Mir-146-P4-v2 Ebu-Mir-146 Gga-Mir-146-P4 Hsa-Mir-146-P4 Lch-Mir-146-P4 Loc-Mir-146-P4 Mdo-Mir-146-P4 Mml-Mir-146-P4 Mmu-Mir-146-P4 Mun-Mir-146-P4 Oan-Mir-146-P4 Ocu-Mir-146-P4 Pma-Mir-146 Rno-Mir-146-P4 Sha-Mir-146-P4 Spt-Mir-146-P4 Sto-Mir-146-P4 Tgu-Mir-146-P4 Xla-Mir-146-P4 Xtr-Mir-146-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_17: 7375710-7375766 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CUCUGGAGACCCUGUGCGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGCGUCAGACCUGUGAAAUUCAGUUCUUCAGCUGGGAUAUCUCUGUCAUCGUGGAUAGAC

Get precursor sequence

Structure

        10           20        30        40        50        
CUCUGGAGACCCUGUGC---|     U     UU            C        GUGUC 
                    GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                    UAUAGG GUCGA  UUCUUGACUUAA GUGUCCAG     G
CAGAUAGGUGCUACUGUCUC^     -     C-            A        ACUGC 
     110       100         90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Cpo-Mir-146-P4_5p

mirBase accession

MIMAT0047016

Sequence

0- UGAGAACUGAAUUCCAUGGGUUG -23

Get sequence

Star sequence

Cpo-Mir-146-P4_3p* (predicted)

mirBase accession

MIMAT0047017

Sequence

35- ACCUGUGAAAUUCAGUUCUUCA -57

Get sequence