MirGeneDB 2.1
MirGeneDB ID

Cpi-Mir-146-P4

Family name MIR-146 (all species)
Seed GAGAACU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-146a
Paralogues Cpi-Mir-146-P1  Cpi-Mir-146-P2 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Bta-Mir-146-P4-v2  Cfa-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Dre-Mir-146-P4-v2  Ebu-Mir-146  Gga-Mir-146-P4  Hsa-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584689: 3139579-3139641 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAAAAUGAACAUCAUGUAUUCUCAGCUUUGAGAACUGAAUUCCAUGUGUUGUAAUUGAAUCUCUGUCAGACCCAUGGGGCUCAGUUCUUCAGCUUGGAUAUCUCUGUCUUCACAUACACAG
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Structure
        10           20        30        40        50        60 
CUUAAAAUGAACAUCAU---|     UC    UU         A       U   GUAAUUGA 
                    GUAUUC  AGCU  GAGAACUGA UUCCAUG GUU        A
                    UAUAGG  UCGA  UUCUUGACU GGGGUAC CAG        U
GACACAUACACUUCUGUCUC^     U-    C-         C       C   ACUGUCUC 
 120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-146-P4_5p
mirBase accessionMIMAT0037774
Sequence 
0- UGAGAACUGAAUUCCAUGUGUUG -23
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Star sequence

Cpi-Mir-146-P4_3p*
mirBase accessionMIMAT0037775
Sequence 
41- ACCCAUGGGGCUCAGUUCUUCA -63
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